BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA12FM1.SCF screened BAC_end
(1042 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig88 632 0.0
>3x_Contig88
Length = 1299
Score = 632 bits (319), Expect = 0.0
Identities = 352/359 (98%), Gaps = 3/359 (0%)
Strand = Plus / Plus
Query: 89 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 742
Query: 149 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 802
Query: 209 tcgagaattgtagt-catttgccgaagtagcaggagatggtcgacatactagtaaatatt 267
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcgagaattgaagaacatttgccgaagtagcaggagatggtcgacatactagtaaatatt 862
Query: 268 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 922
Query: 328 tatctatcaatcgtaagagtccatatttagcatcaatttccccaagcttgacttcgctaa 387
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 923 tatctatcaatcgtaagagtccatatttagcatcaatttcccaaggcttgacttcgctaa 982
Query: 388 aactattcaaaaacgcttgaatgaaatacttgcctttgaaacgtgcaaagaaggcagtt 446
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 983 aactattcaaaaacgcttgaatgaaatac-tgcctttg-aacgtgcaaagaaggcagtt 1039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,149
Number of Sequences: 1807
Number of extensions: 34149
Number of successful extensions: 417
Number of sequences better than 1.0e-20: 1
length of query: 1042
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1026
effective length of database: 10,329,639
effective search space: 10598209614
effective search space used: 10598209614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)