BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZA12RM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1046                                                         700   0.0  

>3x_Contig1046 
          Length = 3637

 Score =  700 bits (353), Expect = 0.0
 Identities = 411/425 (96%), Gaps = 4/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 208 gtaactattacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 267
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaactagtacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 60

                                                                       
Query: 268 attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 120

                                                                       
Query: 328 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 180

                                                                       
Query: 388 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 240

                                                                       
Query: 448 atatgcagaaatgatcaggaaactagcatgatatttgtttgttcagt-aacgatgctgtg 506
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 241 atatgcagaaatgatcaggaaactagcatgatatttg-ttgttcagtaaacgatgctgtg 299

                                                                       
Query: 507 acatctgtaacctattaagcgagtaagtttgcatataaaaagccttcatgatgtgatacc 566
           ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 300 acatctgtaacctatcaagcgagtaag-ttgcatataaaaaggcttcatgatgtgatacc 358

                                                                       
Query: 567 ttccagacctggtgcctagtatgtttcatgtcccataactttatt-tttgaagctttttg 625
           |||  ||||||||||   |||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 359 ttcaggacctggtgctaggtatgtttcatgtcacataactttattatttgaagctttttg 418

                
Query: 626 gttta 630
            ||||
Sbjct: 419 tttta 423


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,831
Number of Sequences: 1807
Number of extensions: 12831
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)