BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB01FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1076 0.0
>3x_Contig1049
Length = 4107
Score = 1076 bits (543), Expect = 0.0
Identities = 566/571 (99%), Gaps = 2/571 (0%)
Strand = Plus / Plus
Query: 117 ttgggattgaaagggcacctccgaacatatatataggatccttcttcacctttgccaata 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ttgggattgaaagggcac-tccgaacatatatataggatccttcttcacctttgccaata 75
Query: 177 gtttttctctttgttttctcttctttaaattctcattggttttttcatctttctcaggaa 236
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 gtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcaggaa 135
Query: 237 tgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttgt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttgt 195
Query: 297 cattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatatg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatatg 255
Query: 357 atcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttctt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttctt 315
Query: 417 caaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatga 375
Query: 477 gttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatcg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatcg 435
Query: 537 tggcagtttcttctcatattacgtatattatttcagtcataaacgttttaaaccaaactt 596
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 436 tggcagtttcttctcatattacgtatatta-ttcagtcataaacgttttaaaccaaactt 494
Query: 597 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaattc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaattc 554
Query: 657 caaggtgaaagaaagttagcaatattgcgac 687
||||||||||||||||||||||||||||||
Sbjct: 555 gaaggtgaaagaaagttagcaatattgcgac 585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8813
Number of Sequences: 1807
Number of extensions: 8813
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)