BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB01RM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1126 0.0
>3x_Contig1791
Length = 39945
Score = 1126 bits (568), Expect = 0.0
Identities = 594/600 (99%), Gaps = 2/600 (0%)
Strand = Plus / Minus
Query: 204 ccagcctgtctagactaacttcacatataactctgccagttaatccaaaatccacgatct 263
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9855 ccagcctgtctagactaacttcacatataactttgccagttaatccaaaatccacgatct 9796
Query: 264 atactaaatccatgtcaattccataaagcaaaggaaattccttttaggagacggaagtgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9795 atactaaatccatgtcaattccataaagcaaaggaaattccttttaggagacggaagtgg 9736
Query: 324 gattttgggccaaatgaggtttaattttcacatgtcatgaaaaacttcgtcttcgagacg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9735 gattttgggccaaatgaggtttaattttcacatgtcatgaaaaacttcgtcttcgagacg 9676
Query: 384 atttgaaaaatggaaagataaaagacaaccagaaaactgcatttcgaggaattgccaaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9675 atttgaaaaatggaaagataaaagacaaccagaaaactgcatttcgaggaattgccaaat 9616
Query: 444 cctatataaggacactgatatgtttttagttaatatgagatgagatgagttggtagttta 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9615 cctatataaggacactgatatgtttttagttaatatgagatgagatgagttggtagttta 9556
Query: 504 tttatattgtgtgtcttgtttcgtatttttatatagatggtagtattagggatattcttt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9555 tttatattgtgtgtcttgtttcgtatttttatatagatggtagtattagggatattcttt 9496
Query: 564 gaagatgcgagagatatctaattccgagatggcaggatcttcaactggattcaacgataa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9495 gaagatgcgagagatatctaattccgagatggcaggatcttcaactggattcaacgataa 9436
Query: 624 cagttcggataacggtatcaaaaatgttgttcatgaggagagtaaactagaagaacatag 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9435 cagttcggataacggtatcaaaaatgttgttcatgaggagagtaaactagaagaacaaag 9376
Query: 684 tatatcgagtaaagatgcttacgatgcgtacggtggtacaggtgaaggtcatttgcgtaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9375 tatatcgagtaaagatgcttacgatgcgtacggtggtacaggtgaaggtcatttgcgtaa 9316
Query: 744 atcattctctctatggtcgattttaagtgttggggttcgggttggaccaattcttggttt 803
||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||
Sbjct: 9315 atcattctctctatggtcgattttaggtgtt-gggttcgggtt-gacgaattcttggttt 9258
Score = 256 bits (129), Expect = 7e-68
Identities = 139/141 (98%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 43 aagcttctcaaactctgtattcaactcaatccttaataactctctcttca-gtaatgttc 101
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10017 aagcttctcaaactctgtattcaactcaatccttaataactctctcttcaagtaatgttc 9958
Query: 102 ttctacggaagaaagttcaacgaccatgcctcctaacctgtgttattccgctcacttcaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9957 ttctacggaagaaagttcaacgaccatgcctcctaacctgtgttattccgctcacttcaa 9898
Query: 162 gaaacacaccgataggtatat 182
|| ||||||||||||||||||
Sbjct: 9897 gacacacaccgataggtatat 9877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,522
Number of Sequences: 1807
Number of extensions: 11522
Number of successful extensions: 1652
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)