BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB02FM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1106 0.0
>3x_Contig1414
Length = 7923
Score = 1106 bits (558), Expect = 0.0
Identities = 600/610 (98%), Gaps = 3/610 (0%)
Strand = Plus / Minus
Query: 211 tgaggtttattggagatgcagcgacagaatttgcaagtttagtggatccgattttaacag 270
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 tgaggtctattggagatgcagcgacagaatttgcaagtttagtggatccgattttaacag 7836
Query: 271 aatcagattcggactcagctaattcgaatcattctgagaataacagcgcgccttctgaac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7835 aatcagattcggactcagctaattcgaatcattctgagaataacagcgcgccttctgaac 7776
Query: 331 ctgaacacaatcaggaccatgaagaaaacaaatctgaaaatcactctggggaagagtctt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7775 ctgaacacaatcaggaccatgaagaaaacaaatctgaaaatcactctggggaagagtctt 7716
Query: 391 atgtttcggaggaagttcactcagttaaagaatcaaatgaattgcatgatgccgaagcac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7715 atgtttcggaggaagttcactcagttaaagaatcaaatgaattgcatgatgccgaagcac 7656
Query: 451 tacaaacactagaaatgattaataaaacaacggacaaaattaaacattatggaggcatgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7655 tacaaacactagaaatgattaataaaacaacggacaaaattaaacattatggaggcatgg 7596
Query: 511 atctacccaaggacactccggatgaagacgttgatacaactccgacctcagttatcatcg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7595 atctacccaaggacactccggatgaagacgttgatacaactccgacctcagttatcatcg 7536
Query: 571 atgataccactgaacttcacttggctccaagcgacgcaaatcctattacgtctcctggtc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7535 atgataccactgaacttcacttggctccaagcgacgcaaatcctattacgtctcctggtc 7476
Query: 631 aaaaactagaaacatctacccgagcaggctcgattccaattgaaatcgaaaatgaagagt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7475 aaaaactagaaacatctacccgagcaggctcgattccaattgaaatcgaaaatgaagagt 7416
Query: 691 cagacgcagctgatattccagtcactattgaaaaagcagaaacacctcagcagagaacac 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7415 cagacgcagctgatattccagtcactattgaaaaagcagaaacacctcagcagagaacac 7356
Query: 751 cgg-ggaaaaaagaccacgcgccacaaaaaacaacaatcccaaaactttcaaagcgtaaa 809
||| | |||||||||||||||||||| | |||| || | ||||||| |||||||||| ||
Sbjct: 7355 cggtgaaaaaaagaccacgcgccacagagaacagcagt-ccaaaaccttcaaagcgt-aa 7298
Query: 810 aagaagcaag 819
||||||||||
Sbjct: 7297 aagaagcaag 7288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6683
Number of Sequences: 1807
Number of extensions: 6683
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)