BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB02RM1.SCF screened BAC_end
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1522 0.0
>3x_Contig1759
Length = 25622
Score = 1522 bits (768), Expect = 0.0
Identities = 808/820 (98%), Gaps = 1/820 (0%)
Strand = Plus / Minus
Query: 53 tatatgccaacggtagtgtcagaagagaggcatactctcaccgagaatatttagacgctg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10023 tatatgccaacggtagtgtcagaagagaggcatactctcaccgagaatatttagacgctg 9964
Query: 113 aaactggggaagcagttgataatagtcagttgtctaaggtctacacttttggcgatgaga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9963 aaactggggaagcagttgataatagtcagttgtctaaggtctacacttttggcgatgaga 9904
Query: 173 tcatagaattaacagaagacgagaatctcaaaattcaaagcggatacatttaacatgaat 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9903 tcatagaattaacagaagacgagaatctcaaaattcaaagcggatacagcgaacatgaat 9844
Query: 233 catttttgaagttaataggattcaggtcaacggaacagtgtttacactattatgacaaca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9843 catttttgaagttaataggattcaggtcaacggaacagtgtttacactattatgacaaca 9784
Query: 293 ttgacgtaccagcttttgttgtaccgaacgaggaagactatgcaggctcgatcaagacac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9783 ttgacgtaccagcttttgttgtaccgaacgaggaagactatgcaggctcgatcaagacac 9724
Query: 353 tagcatcactatatagaacaatgttattcaaaaagaagtctgcaatggtctggggaaaac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9723 tagcatcactatatagaacaatgttattcaaaaagaagtctgcaatggtctggggaaaac 9664
Query: 413 tacggccaaactctccaccatccatgtttgtcctaacaccaagctccaagaaagattata 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9663 tacggccaaactctccaccatccatgtttgtcctaacaccaagctccaagaaagattata 9604
Query: 473 accaaggtttctatctctacaaggttccatttatggaagaggtccgaaaacttcctgatt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9603 accaaggtttctatctctacaaggttccatttatggaagaggtccgaaaacttcctgatt 9544
Query: 533 tcttaaatcattctgcgttaatagaatcagatgattataaagtgatgagcaaagtgacag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543 tcttaaatcattctgcgttaatagaatcagatgattataaagtgatgagcaaagtgacag 9484
Query: 593 aaactttgataaacttcttcaatctcaaaaatgggtatagaccatcagattttcataacc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9483 aaactttgataaacttcttcaatctcaaaaatgggtatagaccatcagattttcataacc 9424
Query: 653 ctgcattacaaaagcatttcaaaatattaagggaataccttttacagattgaggtggata 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9423 ctgcattacaaaagcatttcaaaatattaagggaataccttttacagattgaggtggata 9364
Query: 713 aatcgaaacctgaagatgaaggtgatgaaaccctt-aaaaagtgaagcagatttatgcac 771
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 9363 aatcgaaacctgaagatgaaggtgatgaaacccttcaaaaggtgaagcagatttatgcac 9304
Query: 772 gaattgtcagttttgcgaaatctgatgacgaaaagcaacaacggttagtaaaatacctga 831
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9303 gaattgccagttctgcgaaatctgatgacgtaaagcaacaacggttagtaaaatacctga 9244
Query: 832 aacttgggaaattcttctacaaccgtctgagtaacttaga 871
||||| |||| | ||||||||||||||||||||||||||
Sbjct: 9243 aactttggaattctttctacaaccgtctgagtaacttaga 9204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)