BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB03FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1144 0.0
>3x_Contig1772
Length = 25851
Score = 1144 bits (577), Expect = 0.0
Identities = 627/639 (98%), Gaps = 4/639 (0%)
Strand = Plus / Plus
Query: 88 caacgtttttcgtcattatgcgcctatcctacttgatgttcccagcagatttagaacatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18655 caacgtttttcgtcattatgcgcctatcctacttgatgttcccagcagatttagaacatt 18714
Query: 148 gctctaccgaagaagaaaaatatgttgttagtcatgagattggaactgtttatattgatg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18715 gctctaccgaagaagaaaaatatgttgttagtcatgagattggaactgtttatattgatg 18774
Query: 208 tcgccaatt-angtcngcttatgtttaacctttggagaagaggtgtgttgccagtccttc 266
||||||||| | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18775 tcgccaatttatgcatgcgtatgtttaacctttggagaagaggtgtgttgccagtccttc 18834
Query: 267 attgtttgctattgttgagagtgtatcgcagatatgcacctgaagagggagatattgcgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18835 attgtttgctattgttgagagtgtatcgcagatatgcacctgaagagggagatattgcgg 18894
Query: 327 atggtgctgactctagcacatttacaggttcattagttcagattgctcaatctcttggaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18895 atggtgctgactctagcacatttacaggttcattagttcagattgctcaatctcttggaa 18954
Query: 387 taaatacagatgctgaagcatcgtaccagctaaccaattttgagatttatttacattctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18955 taaatacagatgctgaagcatcgtaccagctaaccaattttgagatttatttacattctt 19014
Query: 447 ggagaaaggcctggtacactatatatttcatggatgtttctgaggcaatgaatatgggga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19015 ggagaaaggcctggtacactatatatttcatggatgtttctgaggcaatgaatatgggga 19074
Query: 507 attgcttcactattgacgtagaccaattcaacaccaaacttcctcatatcaaacgagaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19075 attgcttcactattgacgtagaccaattcaacaccaaacttcctcatatcaaacgagaag 19134
Query: 567 aagatgggagcatcccggaatttttcctaaatcctacccatgagggggccagtgttgact 626
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 19135 aagatgggagcatcccggaatttttcctaaatcctacccatgaggtggccagtgttgact 19194
Query: 627 gctataggaaaaaccttggaattttc-ttacatgtgaggaaacttttaaatgttgtcatg 685
||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 19195 gctataggaaaaa-ctttgaattttctttacatgtgaggaaacttttaaaggttgtcatg 19253
Query: 686 aacaaaa-aaacagatccccttgcaataccataatggat 723
||||||| |||||||||||||||||||||||||||||||
Sbjct: 19254 aacaaaagaaacagatccccttgcaataccataatggat 19292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7060
Number of Sequences: 1807
Number of extensions: 7060
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)