BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig330 1201 0.0
>3x_Contig330
Length = 1954
Score = 1201 bits (606), Expect = 0.0
Identities = 709/730 (97%), Gaps = 10/730 (1%)
Strand = Plus / Minus
Query: 47 gctttcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 gctttcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatca 1105
Query: 107 gaagtgaacaagaatatggcataaagatactgtaatgaagatct-ctttaatgcaataaa 165
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1104 gaagtgaacaagaatatggcataaagatactgtaatgaagatcttctttaatgcaataaa 1045
Query: 166 gtgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctataatttg 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1044 gtgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattg 985
Query: 226 agatgatattatatttacttttttccttttcattgttgtcaaatcaagattataaaatcc 285
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 984 agatgatatggaatttacttttt-ccttttcattgttgtcaaatcaagattataaaatcc 926
Query: 286 aatgtcaatttaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaat 345
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aatgtcaattgaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaat 866
Query: 346 tatcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tatcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcga 806
Query: 406 ctgttcacttcatcgcgtttggtaatatttgcctcttcctccaaaactccgtaaatgatg 465
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgttcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatg 746
Query: 466 tctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaa 686
Query: 526 aatctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcg 626
Query: 586 agcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatc 566
Query: 646 ttttcaatgagatgtttgacattccgattttattcgctaattctatacagaaataatccc 705
|||||||||||||| |||||||||||| |||| ||| ||||||||||||| ||||||||
Sbjct: 565 ttttcaatgagatg-ttgacattccga-tttaatcggtaattctatacag-aataatccg 509
Query: 706 ggtgaaacgtaaagaattagtccgagttttcaagttagaccagattctttggccaaaaac 765
|||| |||||||||||||||| |||||||||||| |||| |||| || |||||||||||
Sbjct: 508 ggtg-aacgtaaagaattagt-cgagttttcaag-tagaacaga-tccttggccaaaaa- 454
Query: 766 cctccaaaat 775
||||||||||
Sbjct: 453 cctccaaaat 444
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8931
Number of Sequences: 1807
Number of extensions: 8931
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)