BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB04FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 835 0.0
>3x_Contig1198
Length = 5263
Score = 835 bits (421), Expect = 0.0
Identities = 436/441 (98%)
Strand = Plus / Minus
Query: 85 ttgaacaacatccaagatttgttgggacaaggtggcatcagccaatgggaaagcctttgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4960 ttgaacaacatccaagatttgttgggacaaggtggcatcagccaatgggaaagcctttgg 4901
Query: 145 gtttggagcagacattatttctttataatatgaagtgaagtatccgattgggtcagttca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4900 gtttggagcagacattatttctttataatatgaagtgaagtatccgattgggtcagttca 4841
Query: 205 agttccttgttataatgaaaagctcgcttgaatctggtgttttaagactagaaataagat 264
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840 agttccttgcaagaatgaaaagctcgcttgaatctggtgttttaagactagaaataagat 4781
Query: 265 cggatcaagtccaagtctaaaaaaagttttatcataaagtgagatgagatggaacgagat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4780 cggatcaagtccaagtctaaaaaaagttttatcataaagtgagatgagatggaacgagat 4721
Query: 325 gagatgaggttagtctcttgaaatcattttctttagtttttcaatttttgaaaattttcg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4720 gagatgaggttagtctcttgaaatcattttctttagtttttcaatttttgaaaattttcg 4661
Query: 385 aattcctcgactgatgagcaaaaagaaacaaatgggatcacaaactggtgtaatgtacgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660 aattcctcgactgatgagcaaaaagaaacaaatgggatcacaaactggtgtaatgtacgg 4601
Query: 445 ctgtttcactatattaattcagaagaacgatatacattcctcctattgtgatcatttggc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4600 ctgtttcactatattaattcagaagaacgatatacattcctcctattgtgatcatttggc 4541
Query: 505 cattttcccccattgctatag 525
|||| ||| ||||||||||||
Sbjct: 4540 cattctccgccattgctatag 4520
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,718
Number of Sequences: 1807
Number of extensions: 21718
Number of successful extensions: 2949
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)