BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZB04RM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1686                                                         880   0.0  

>3x_Contig1686 
          Length = 15382

 Score =  880 bits (444), Expect = 0.0
 Identities = 470/476 (98%), Gaps = 2/476 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tttgagtaacttccttccgatagtaatagatgaaatattatagtaccttctatatcataa 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14587 tttgagtaacttccttccgatagtaatagatgaaatattatagtaccttctatatcataa 14646

                                                                         
Query: 108   atttagggatttgtttttttgtactttcggtattgtgtcaacattaccgttaaaaatatg 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14647 atttagggatttgtttttttgtactttcggtattgtgtcaacattaccgttaaaaatatg 14706

                                                                         
Query: 168   tgcatctttgtggcgaggaataaaaagaaatttaaagtttgacggcaaagaagcgtcagt 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14707 tgcatctttgtggcgaggaataaaaagaaatttaaagtttgacggcaaagaagcgtcagt 14766

                                                                         
Query: 228   ttcctgaaagagtgataatatggtaagatacttcagaaagtgataggaaggtgaatcagt 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14767 ttcctgaaagagtgataatatggtaagatacttcagaaagtgataggaaggtgaatcagt 14826

                                                                         
Query: 288   tacactttaatttcctctgacaatctaacacaaataatataagatttcctcctattcaat 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14827 tacactttaatttcctctgacaatctaacacaaataatataagatttcctcctattcaat 14886

                                                                         
Query: 348   ttactacctgctcgtcttgttcttttgatcactttatcagactattctatttcctcaaaa 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14887 ttactacctgctcgtcttgttcttttgatcactttatcagactattctatttcctcaaaa 14946

                                                                         
Query: 408   ggcaaggtcattgtgagaagtttacaatgcaaaaaatctatttgttttaatcagtaagat 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14947 ggcaaggtcattgtgagaagtttacaatgcaaaaaatctatttgttttaatcagtaagat 15006

                                                                     
Query: 468   tgggcaaattttcgggccgt-agcctttaccctgtcatttaatttgcataatatgc 522
             ||||||||||||| |||||| ||||||||||   |||||||||| |||||||||||
Sbjct: 15007 tgggcaaattttc-ggccgtaagcctttacctgttcatttaattcgcataatatgc 15061


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9070
Number of Sequences: 1807
Number of extensions: 9070
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)