BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB05FM1.SCF screened BAC_end
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1251 0.0
>3x_Contig1645
Length = 12736
Score = 1251 bits (631), Expect = 0.0
Identities = 730/757 (96%), Gaps = 5/757 (0%)
Strand = Plus / Minus
Query: 88 aacatttgaagtttctgtattggagaactgataaacgttgtattgtggattaagcgtgta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10252 aacatttgaagtttctgtattggagaactgataaacgttgtattgtggattaagcgtgta 10193
Query: 148 ttgtccgttttcctcattgaaattccatttccataacctgatatacctgtaaatgtccgt 207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ttgtccgttttcctcattgaaatcccatttccataacctgatatacctgtaaatgtccgt 10133
Query: 208 attgttcttcatacnt-gaagcattcttcgtacgaggttattcaacaccacactcccgtc 266
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 attgttcttcaaaccttgaagcattcttcgtacgaggttattcaacaccacactcccgtc 10073
Query: 267 agcgcttccagataataacatggggtgaagagacgaggcaccaagtgatatcacagtatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 agcgcttccagataataacatggggtgaagagacgaggcaccaagtgatatcacagtatt 10013
Query: 327 atcgtgttgacaaatgttatggtcgacaaagatagcgcgaggtgtgaacgccttaattga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 atcgtgttgacaaatgttatggtcgacaaagatagcgcgaggtgtgaacgccttaattga 9953
Query: 387 acttagagaatcggttcgaattactgtgtatagttgaggaagatatattaaaggaagtgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9952 acttagagaatcggttcgaattactgtgtatagttgaggaagatatattaaaggaagtgt 9893
Query: 447 attacttccacgagttcttgtagcgaaggttttcgttaaccgaatatccttntggtcgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9892 attacttccacgagttcttgtagcgaaggttttcgttaaccgaatatcctttgggtcgaa 9833
Query: 507 tatgcaacaattaccatctactgcactcatgcaaataagggtattctcaaaattggatcg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9832 tatgcaacaattaccatctactgcactcatgcaaataagggtattctcaaaattggatcg 9773
Query: 567 taatacaatggtggagatcacatacgattcaaaaagctgcttgtattcatagaacctatc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9772 taatacaatggtggagatcacatacgattcaaaaagctgcttgtattcatagaacctatc 9713
Query: 627 gtcgctgaccgaatactctccgtaatatccattttgaaagccgcacacaatgtcgtttga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712 gtcgctgaccgaatactctccgtaatatccattttgaaagccgcacacaatgtcgtttga 9653
Query: 687 gcttttaaaattgaagctggtgattccagaatc-atcccttctatagtaaagcctgga-t 744
|||| |||||| ||||||||||||||||||||| |||||| ||||||| || ||||| |
Sbjct: 9652 gcttctaaaatcgaagctggtgattccagaatcaatccctcctatagttaacgctggatt 9593
Query: 745 gggtaaatggtgaatttggcccttggaactttttttaatttggcaaaaattttataggtg 804
| ||||||||||||||||||| ||| | || |||| || ||||||||||||||||| |||
Sbjct: 9592 gtgtaaatggtgaatttggcctttgaagctcttttcaa-ttggcaaaaattttata-gtg 9535
Query: 805 ccattttggaaaaaaccattaaaaaccccaatatgtg 841
|||| |||||||| |||| | ||||| ||||||||||
Sbjct: 9534 ccatcttggaaaacaccagtcaaaacgccaatatgtg 9498
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5490
Number of Sequences: 1807
Number of extensions: 5490
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)