BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB06FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig275 959 0.0
>3x_Contig275
Length = 1611
Score = 959 bits (484), Expect = 0.0
Identities = 518/524 (98%), Gaps = 4/524 (0%)
Strand = Plus / Plus
Query: 235 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 505
Query: 295 agtagggaaagaatcattgcagaattggggttacgaagtaataaatgaaatatcttggat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtagggaaagaatcattgcagaattggggttacgaagtaataaatgaaatatcttggat 565
Query: 355 caagacaaaccaattaggaagaacaattgtgacaggtagaactggccattggttgaacca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caagacaaaccaattaggaagaacaattgtgacaggtagaactggccattggttgaacca 625
Query: 415 cagtaaagagcatttactcgtcggggtcaaaggcaatccggaatggctaaacagaaaaat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagtaaagagcatttactcgtcggggtcaaaggcaatccggaatggctaaacagaaaaat 685
Query: 475 agacattgacttgatcattagcgcaactagagaaaccagtagaaagccggacgaattgta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agacattgacttgatcattagcgcaactagagaaaccagtagaaagccggacgaattgta 745
Query: 535 tggaatcattgaaagacttgtcggtacacatgcccgtaaacttgaaattttcggtaggga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tggaatcattgaaagacttgtcggtacacatgcccgtaaacttgaaattttcggtaggga 805
Query: 595 ccataacatccgtcctggatggttcacgataggaaatcaagtgacaggctcatctatcca 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ccataacatccgtcctggatggttcacgataggaaatcaagtgacaggctcatctatcca 865
Query: 655 tgaagtggatgtgaaaaggaaatacgaaagattcatggaaaaatcaaagtaattcaaaga 714
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 866 tgaagtggatgtgaaaaggaaatacgaaagattcatggaaaaatcaaag-aattcaaaga 924
Query: 715 caaactataagatttaattactctttttactttcaaatgtccta 758
||||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct: 925 caaacta-aagatgtaa-tactctctttac-ttcaaatgtccta 965
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7897
Number of Sequences: 1807
Number of extensions: 7897
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)