BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZB06RM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1581                                                        1346   0.0  

>3x_Contig1581 
          Length = 11429

 Score = 1346 bits (679), Expect = 0.0
 Identities = 773/794 (97%), Gaps = 8/794 (1%)
 Strand = Plus / Minus

                                                                        
Query: 45   gctttaacagaatgcaccaaggaaactggaatcaaagatgtggatttatgagaggtaata 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6004 gctttaacagaatgcaccaaggaaactggaatcaaagatgtggatttatgagaggtaata 5945

                                                                        
Query: 105  tgccctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatggt 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5944 tgccctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatggt 5885

                                                                        
Query: 165  accaggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtgggtttaatt 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 5884 accaggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtgggtagaatt 5825

                                                                        
Query: 225  ccttccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatgc 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 ccttccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatgc 5765

                                                                        
Query: 285  aaatagttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 aaatagttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaat 5705

                                                                        
Query: 345  tccgttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatgaa 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 tccgttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatgaa 5645

                                                                        
Query: 405  acagaagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccggt 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 acagaagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccggt 5585

                                                                        
Query: 465  aaatactcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgattn 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5584 aaatactcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgattt 5525

                                                                        
Query: 525  tgcagtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctgg 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 tgcagtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctgg 5465

                                                                        
Query: 585  aacggtatttgtacctggttgacaaagttaacatctgaaaatgttttattgatcgaagga 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 aacggtatttgtacctggttgacaaagttaacatctgaaaatgttttattgatcgaagga 5405

                                                                        
Query: 645  cggcgccttcgaagtgacgctcttggaagttacaaactatttttcgcttattttattcac 704
            ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 5404 cggcg-cttcgaagtgacgctcttggaagttacaatc-atttttcgcttattttattcac 5347

                                                                        
Query: 705  acctttttaaaatcaataaaacgagtggtacgaaggtgaattgaaaataatttagcaaac 764
            ||||| |||||||||||||| ||||||| |||||| |||| ||| |||||||||||||||
Sbjct: 5346 accttcttaaaatcaataaagcgagtggaacgaagttgaa-tgagaataatttagcaaac 5288

                                                                        
Query: 765  gattggaatagatcgaaaaggaactgttactttatgggagcgagccatcgatttttagag 824
            || | |||||||||||||| ||||||||||||||| |||||||| || ||| ||||||||
Sbjct: 5287 ga-tagaatagatcgaaaa-gaactgttactttat-ggagcgag-cagcga-ttttagag 5233

                          
Query: 825  cccactgtccctat 838
            || |||||| ||||
Sbjct: 5232 ccgactgtcactat 5219


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,590
Number of Sequences: 1807
Number of extensions: 14590
Number of successful extensions: 198
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)