BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB07FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig742 1015 0.0
>3x_Contig742
Length = 2433
Score = 1015 bits (512), Expect = 0.0
Identities = 589/608 (96%), Gaps = 5/608 (0%)
Strand = Plus / Minus
Query: 89 ataataattactaaccagaaactaccacacaccattatttaccagttggacttggatcac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ataataattactaaccagaaactaccacacaccattatttaccagttggacttggatcac 844
Query: 149 aatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactagtacagt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactagtacagt 784
Query: 209 tgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttcaggtgtc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttcaggtgtc 724
Query: 269 agtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgagttttac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgagttttac 664
Query: 329 taactaatgattaatttcaaccttttattacagtcccactaatcggtattaacattctcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taactaatgattaatttcaaccttttattacagtcccactaatcggtattaacattctcg 604
Query: 389 tgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgtacaata 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgtacaata 544
Query: 449 aatagagatagttcggaatatcaataacttatactggtggcaatttaggtttatcatgat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatagagatagttcggaatatcaataacttatactggtggcaatttaggtttatcatgat 484
Query: 509 gctggttgtattgcttatcactattataaaacaattattttaaagtttccattaatgtcc 568
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 483 gctggttgtattgcttatcactattataaaacaatta-tttaaagtttccatcaatgtcc 425
Query: 569 ttttaactttgtgatgggggggaattttcccaaaaagaaaaattgattttcaaggaagct 628
||| ||||| ||||||| ||| ||| | | ||||||| ||||| || | |||||||||||
Sbjct: 424 tttcaacttcgtgatggtgggaaatatccacaaaaag-aaaatagaatatcaaggaagct 366
Query: 629 aagaaaagggtaaagcgagtgaattgaatgggatttcatttatggttagggcgaacatca 688
||| ||||||||||||||||||||||||||| || ||| ||||||||| ||||| |||||
Sbjct: 365 aag-aaagggtaaagcgagtgaattgaatggtatgtca-ttatggtta-ggcgagcatca 309
Query: 689 gttgcttt 696
||||||||
Sbjct: 308 gttgcttt 301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7981
Number of Sequences: 1807
Number of extensions: 7981
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)