BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB07RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 1352 0.0
>3x_Contig1587
Length = 10277
Score = 1352 bits (682), Expect = 0.0
Identities = 778/802 (97%), Gaps = 6/802 (0%)
Strand = Plus / Minus
Query: 48 gcttagtgataaagcattcgaaagctcaagaaaggtagccataatactagaggaaccgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10082 gcttagtgataaagcattcgaaagctcaagaaaggtagccataatactagaggaaccgaa 10023
Query: 108 tattttagagtcacttgaattgatcggaagttctgcctttaaggtgcaaataaaatcaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10022 tattttagagtcacttgaattgatcggaagttctgcctttaaggtgcaaataaaatcaat 9963
Query: 168 tttgaaaaagctgaagtcaggcatcccaattgatgaattacctcagttcaaaacagctag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962 tttgaaaaagctgaagtcaggcatcccaattgatgaattacctcagttcaaaacagctag 9903
Query: 228 tatgttgcacgaactggttttacctgtaaatatccccaccctgtcgttgttctattcggt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9902 tatgttgcacgaactggttttacctgtaaatatccccaccctgtcgttgttctattcggt 9843
Query: 288 acattttagacagatagacaccaacaaggagctaaaagctggtgttccttcttcatttaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9842 acattttagacagatagacaccaacaaggagctaaaagctggtgttccttcttcatttaa 9783
Query: 348 aattgaaatcaccaatttatcaggtacttgggacttgcaagagtcccaagaaaatgcgat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9782 aattgaaatcaccaatttatcaggtacttgggacttgcaagagtcccaagaaaatgcgat 9723
Query: 408 attaactatagctaataactcggattggataattggagggaagagacgatttgaacttga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9722 attaactatagctaataactcggattggataattggagggaagagacgatttgaacttga 9663
Query: 468 tacgaagagaatcgatgccaccgttaatcttataccattaagaagagggtatttgaatta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9662 tacgaagagaatcgatgccaccgttaatcttataccattaagaagagggtatttgaatta 9603
Query: 528 tccctcgattgaacttactggacttaacggtgaacgtactggtcaaatggattaccttgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9602 tccctcgattgaacttactggacttaacggtgaacgtactggtcaaatggattaccttgc 9543
Query: 588 ttcgaacgataaactattgatattttgaggaatcacaaatatttatacaatttatagata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9542 ttcgaacgataaactattgatattttgaggaatcacaaatatttatacaatttatagata 9483
Query: 648 ttattttgaattattaatcgcattaaataatgatactgggtccggtttgtttgctgacta 707
|||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 9482 ttatttgtaattattaatcgcattaaataatgatactggttccggtttg-ttgctgacta 9424
Query: 708 catctggtactaaacctttttct-ataagtactgttttcgttgtaggacctatgcttgca 766
||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 9423 catctggtactaaacctttttctaagaggtactg-tttcgttgtaggacctatgctagca 9365
Query: 767 aatttttaccca-gaagttttttttagaaaacgattattttttttgtgcccttgtgggct 825
||||| || ||| || ||| |||| ||||| ||| |||| || |||| |||||||||||
Sbjct: 9364 aatttataaccaggacgttcttttaagaaactgataatttcttctgtg-ccttgtgggct 9306
Query: 826 taaaaagaaaaacccaagtgtt 847
|||||| | ||||||||||||
Sbjct: 9305 aaaaaag-acaacccaagtgtt 9285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7783
Number of Sequences: 1807
Number of extensions: 7783
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)