BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB08FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1400 0.0
>3x_Contig1261
Length = 9103
Score = 1400 bits (706), Expect = 0.0
Identities = 772/790 (97%), Gaps = 3/790 (0%)
Strand = Plus / Minus
Query: 85 caaagactgaaaagtaaccaaagtggatcagcatcagtttctgctattctggaaggatcg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 caaagactgaaaagtaaccaaagtggatcagcatcagtttctgctattctggaaggatcg 8104
Query: 145 cctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagcatta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 cctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagcatta 8044
Query: 205 gtctctaatgaatctgtcacaaccaacactgacggatcaacaactccaagttcgacaaat 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 gtctctaatgaagctgtcacaaccaacactgacggatcaacaactccaagttcgacaaat 7984
Query: 265 tcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaaatt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7983 tcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaaatt 7924
Query: 325 ggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaacaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7923 ggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaacaga 7864
Query: 385 ctaattgaacacggtgagtttgagactataatttttggcgataaagttatattggatgaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7863 ctaattgaacacggtgagtttgagactataatttttggcgataaagttatattggatgaa 7804
Query: 445 agcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttccct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7803 agcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttccct 7744
Query: 505 ctagaaaaggctatcaaatatgtcaagttaagaaaaccatatatcattaatgatttgatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 ctagaaaaggctatcaaatatgtcaagttaagaaaaccatatatcattaatgatttgatt 7684
Query: 565 atgcaaaaagtattgtgggatagaaggttgtgtctcaagttgctggcggcaagcaacgta 624
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7683 atgcaaaaagtattgtgggatagaaggttgtgtctcaggttgctggcggcaagcaacgta 7624
Query: 625 cctacccctcctagattggaaattacaagagatggtggtcccaaaattgatgatgaactg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 cctacccctcctagattggaaattacaagagatggtggtcccaaaattgatgatgaactg 7564
Query: 685 aaatctatgcttgccgaacgtggagttattgtttcaaactgttcaagaacccaactgaag 744
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 7563 aaatctatgcttgccgaacgtggagttattgtttc-aactgttcaagaacccaactggag 7505
Query: 745 aatggtggacgatgacaccttggaagtttgagggtaaagtgatgacccaaccattctttg 804
|||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||
Sbjct: 7504 aatggtggacgatgacaccttggaag-ttgagggtaaggtgatgaccaaaccattcgttg 7446
Query: 805 aaaaacctggggttggggaagatcacaatttattcctctttttttcattcgaaaaacgga 864
||||||||| || ||| |||||||||||| ||| | || | || ||||||||||||||||
Sbjct: 7445 aaaaacctgtggatggtgaagatcacaatatatacatc-tattatcattcgaaaaacgga 7387
Query: 865 ggcggggggc 874
||||| ||||
Sbjct: 7386 ggcggtgggc 7377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)