BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB08RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 839 0.0
>3x_Contig1620
Length = 12263
Score = 839 bits (423), Expect = 0.0
Identities = 451/455 (99%), Gaps = 4/455 (0%)
Strand = Plus / Plus
Query: 43 gcttctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gcttctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcg 2005
Query: 103 tctaattcgctctctgccattttttcattattaacaatccaaaggccttccacagaagca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 tctaattcgctctctgccattttttcattattaacaatccaaaggccttccacagaagca 2065
Query: 163 gaagtccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 gaagtccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaa 2125
Query: 223 ttactccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgata 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 ttactccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgata 2185
Query: 283 tagtcgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 tagtcgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaac 2245
Query: 343 caccaattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 caccaattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctt 2305
Query: 403 tcaaccgaactttctattccttcccattctttgtccctcgtgatgtgctctttggttgtt 462
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2306 tcaaccgaactttctattccttcccattctttgtccctcgtgatgtgctc-ttggttgtt 2364
Query: 463 cttgcttttccgacacaatttgaaccaaatccaaa 497
| ||| |||||||||||||||||| ||||||||||
Sbjct: 2365 c-tgc-tttccgacacaatttgaa-caaatccaaa 2396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,853
Number of Sequences: 1807
Number of extensions: 14853
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)