BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB09FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1388 733 0.0
>3x_Contig1388
Length = 8256
Score = 733 bits (370), Expect = 0.0
Identities = 410/422 (97%), Gaps = 1/422 (0%)
Strand = Plus / Minus
Query: 85 tgtattgaagaaaattgaaacatgggtcgatccattgatcaatctgatcccattcggtat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7401 tgtattgaagaaaattgaaacatgggtcgatccattgatcaatctgatcccattcggtat 7342
Query: 145 taagtactatagggaagttgaagtggacagatcacttgaatatacttccgtttacctggg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7341 taagtactatagggaagttgaagtggacagatcacttgaatatacttccgtttacctggg 7282
Query: 205 gtcagaatccatattttccttgcataatacggatactccagcggagcccacatttcaagg 264
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7281 gtcagaatccagattgcccttgcataatacggatactccagcggagcccacatttcaagg 7222
Query: 265 aaacggaagagtcttgggaaattgaaatgtgaatcctcagaaattagatactagagattt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7221 aaacggaagagtcttgggaaattgaaatgtgaatcctcagaaattagatactagagattt 7162
Query: 325 aaatcatctgctgttcttcttctttttcttcaaacccaacttttgaaatattgataatta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7161 aaatcatctgctgttcttcttctttttcttcaaacccaacttttgaaatattgataatta 7102
Query: 385 tatttacatgcgtgttacttcgatgcggcgggggagattatattcattctatatacatag 444
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7101 tatttacatgcgtgttacttcgatgcggcggggagaattatattcattctatatacatag 7042
Query: 445 ggaaacatcctttttaattaatttctggcatttccttcttttctctcataccttgagttc 504
|||||||||||||||||||| |||||| || ||||| ||||||||||||| ||||||||
Sbjct: 7041 ggaaacatcctttttaattattttctgtca-ttcctctttttctctcatacgttgagttc 6983
Query: 505 ct 506
||
Sbjct: 6982 ct 6981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,797
Number of Sequences: 1807
Number of extensions: 12797
Number of successful extensions: 144
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)