BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZB09RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1738                                                        1003   0.0  

>3x_Contig1738 
          Length = 21411

 Score = 1003 bits (506), Expect = 0.0
 Identities = 563/578 (97%), Gaps = 3/578 (0%)
 Strand = Plus / Minus

                                                                         
Query: 46    ctttaaacgattcttcttccacaatggtagtttgaaccacttctgaatttgggaagacac 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16940 ctttaaacgattcttcttccacaatggtagtttgaaccacttctgaatttgggaagacac 16881

                                                                         
Query: 106   cccatgtgacagcattggagcttttaggttgtaggttagtttcgaagtaacccgtataat 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16880 cccatgtgacagcattggagcttttaggttgtaggttagtttcgaagtaacccgtataat 16821

                                                                         
Query: 166   cacccaagtaataactaaactcaccgttcttgctttcaatctttggtttgagaacctgat 225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16820 cacccaagtaataactaaactcaccgttcttgctttcaatctttggtttgagaacctgat 16761

                                                                         
Query: 226   tccattcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattgg 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16760 tccattcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattgg 16701

                                                                         
Query: 286   caggtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgagg 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16700 caggtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgagg 16641

                                                                         
Query: 346   ccaaggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggttt 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16640 ccaaggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggttt 16581

                                                                         
Query: 406   cagcagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaagtatcgta 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 16580 cagcagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaggtatcgta 16521

                                                                         
Query: 466   tgaaaatgtttttgatatccttcaaagaaaccggatgatcccaaagtt-gtatgccgtgc 524
             ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 16520 tgaaaatgtttttgatatcctccaaagaaaccggatgatcccaaagttcgtatgccgtgc 16461

                                                                         
Query: 525   tgttacaaactttaagcgatggttcgtacccataaattt-accgtacgcggaaaattttg 583
             ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||| | || | |
Sbjct: 16460 tgttacaaactttgagcgatggtccgtacccatcaatttcaccgtacgcgggagatctcg 16401

                                                   
Query: 584   aattaccgaattatacggttgggaaactcatcccaagt 621
             ||| |||||| | ||| |||||||||||||||||||||
Sbjct: 16400 aatcaccgaa-tctaccgttgggaaactcatcccaagt 16364


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,392
Number of Sequences: 1807
Number of extensions: 14392
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)