BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB10FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 874 0.0
3x_Contig1015 452 e-127
3x_Contig1745 412 e-115
>3x_Contig1806
Length = 53694
Score = 874 bits (441), Expect = 0.0
Identities = 532/553 (96%), Gaps = 7/553 (1%)
Strand = Plus / Minus
Query: 89 atgagagctttagctttttgtaatcatgggaactcgacaggagtaccagactggttgaca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52084 atgagagctttagctttttgtaatcatgggaactcgacaggagtaccagactggttgaca 52025
Query: 149 attacagtgttaggattggcctccaaaacagcacggacgagatcgtttgttcttcctggc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52024 attacagtgttaggattggcctccaaaacagcacggacgagatcgtttgttcttcctggc 51965
Query: 209 aaagtcatttttttcttatcatgaccttcagattcccattctgcgttcaaaccaatacat 268
|||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51964 aaagtcatatcttccctatcatgaccttcagattcccattctgcgttcaaaccaatacat 51905
Query: 269 aaaatggctttatcgtgacccgcagcaagttttgctgccttcttgatttcctcatctgca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51904 aaaatggctttatcgtgacccgcagcaagttttgctgccttcttgatttcctcatctgca 51845
Query: 329 tcaatagcctttgcaacaccaacctggagagcaccagctccgaattcacttaccagttgg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51844 tcaatagcctttgcaacaccaacctggagagcaccagctccgaattcacttaccagttgg 51785
Query: 389 ctagttgggccagagccatattcgattctgactttatacgatttacccttttgtagagta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51784 ctagttgggccagagccatattcgattctgactttatacgatttacccttttgtagagta 51725
Query: 449 acagtcttagtctttttcattggtaccagcaccgaaacagaatccaccacgggtttgacc 508
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51724 acagtcttagtc-ttttcattggtaccagcaccgaaacagaatccaccacgggtttgacc 51666
Query: 509 tttcttctgatcaatcaataatttttttattcaagttccatagaccagtaccgttaaacc 568
||||||||||||||||||||| || || || ||||| | |||||||||||||| ||||||
Sbjct: 51665 tttcttctgatcaatcaataa-ttcttcatccaagtacaatagaccagtaccg-taaacc 51608
Query: 569 tgccaaccaaattatgtagttagcattctttctcaagagtgaaataacccttcaagtggt 628
||| ||||||| ||||||||||||| |||| |||| ||||||| ||| ||||||||| ||
Sbjct: 51607 tgcaaaccaaa-tatgtagttagca-tcttcctcaggagtgaagtaa-ccttcaagt-gt 51552
Query: 629 gaggtaaaataat 641
|| ||||||||||
Sbjct: 51551 gatgtaaaataat 51539
>3x_Contig1015
Length = 4152
Score = 452 bits (228), Expect = e-127
Identities = 388/440 (88%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 92 agagctttagctttttgtaatcatgggaactcgacaggagtaccagactggttgacaatt 151
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 agagcattagctttttgtaaccatgggaactcgacaggagtaccagactggttgacaatt 3978
Query: 152 acagtgttaggattggcctccaaaacagcacggacgagatcgtttgttcttcctggcaaa 211
||||||||||| || |||||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 3977 acagtgttagggttagcctccaatacagcacgaactagatcgtttgttcttgctggcaac 3918
Query: 212 gtcatttttttcttatcatgaccttcagattcccattctgcgttcaaaccaatacataaa 271
||||| | || | ||||||| || |||||||||||||| || |||||||| || ||||||
Sbjct: 3917 gtcatatcttccctatcatggccctcagattcccattcagcattcaaaccgatgcataaa 3858
Query: 272 atggctttatcgtgacccgcagcaagttttgctgccttcttgatttcctcatctgcatca 331
||||||||||| ||| | || ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3857 atggctttatcatgagcggctgcaagctttgctgctttcttgatttcctcatctgcatca 3798
Query: 332 atagcctttgcaacaccaacctggagagcaccagctccgaattcacttaccagttggcta 391
||||| || | ||||||||||| |||||||||| |||||||||||| |||| | |||
Sbjct: 3797 atagctttggtgacaccaacctgaagagcaccagatccgaattcactcaccaactcgctt 3738
Query: 392 gttgggccagagccatattcgattctgactttatacgatttacccttttgtagagtaaca 451
||||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 3737 gttggaccagaaccatattcgattctgactttatacgctttacccttttgtaaagtaaca 3678
Query: 452 gtcttagtctttttcattggtaccagcaccgaaacagaatccaccacgggtttgaccttt 511
||||| ||| |||||| ||||||| |||||||||||||| |||||| | ||| || ||
Sbjct: 3677 gtcttggtc-ttttcaatggtaccggcaccgaaacagaaatcaccactgacttggccctt 3619
Query: 512 cttctgatcaatcaataatt 531
| ||||||||||||||||||
Sbjct: 3618 cctctgatcaatcaataatt 3599
>3x_Contig1745
Length = 19830
Score = 412 bits (208), Expect = e-115
Identities = 356/404 (88%), Gaps = 1/404 (0%)
Strand = Plus / Plus
Query: 128 ggagtaccagactggttgacaattacagtgttaggattggcctccaaaacagcacggacg 187
||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 62 ggagtaccagactggttgatgatgacagtgttaggattggcctctaagacagcacggacg 121
Query: 188 agatcgtttgttcttcctggcaaagtcatttttttcttatcatgaccttcagattcccat 247
||||||||||||||||||||||| |||| | || | |||||||||||||||||||||||
Sbjct: 122 agatcgtttgttcttcctggcaagatcatatcttccctatcatgaccttcagattcccat 181
Query: 248 tctgcgttcaaaccaatacataaaatggctttatcgtgacccgcagcaagttttgctgcc 307
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 182 tctgcgttcaaaccaatacataaaatggctttgtcgtgacccgcagcaagttttgctgcc 241
Query: 308 ttcttgatttcctcatctgcatcaatagcctttgcaacaccaacctggagagcaccagct 367
||| ||||||| |||||||||||||||||||| ||||||||||| || | | | |||| |
Sbjct: 242 ttcctgatttcttcatctgcatcaatagccttggcaacaccaacttgaaaaccgccagat 301
Query: 368 ccgaattcacttaccagttggctagttgggccagagccatattcgattctgactttatac 427
|| |||||||| |||| | || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 302 ccaaattcactcaccaactcacttgttggaccagaaccgtattcgattctaactttatac 361
Query: 428 gatttacccttttgtagagtaacagtcttagtctttttcattggtaccagcaccgaaaca 487
| |||||||||||| ||| | |||||||| ||| ||||||| ||||||||||||||| ||
Sbjct: 362 gctttacccttttgcagactgacagtcttggtc-ttttcatcggtaccagcaccgaagca 420
Query: 488 gaatccaccacgggtttgacctttcttctgatcaatcaataatt 531
||| | ||||| ||||| ||||||||||||||| || |||||
Sbjct: 421 gaaacttccacgagtttggtctttcttctgatcaaccactaatt 464
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,263
Number of Sequences: 1807
Number of extensions: 13263
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 3
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)