BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB10RM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1406 730 0.0
>3x_Contig1406
Length = 8172
Score = 730 bits (368), Expect = 0.0
Identities = 420/428 (98%), Gaps = 7/428 (1%)
Strand = Plus / Plus
Query: 47 caatcactcgataacgtggatcctaagttaattagtaagttaatcaatgacaagactaac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7307 caatcactcgataacgtggatcctaagttaattagtaagttaatcaatgacaagactaac 7366
Query: 107 gagcttaatattaagaacgaactacagatgttgaaacagttacaggcagaagaacagaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7367 gagcttaatattaagaacgaactacagatgttgaaacagttacaggcagaagaacagaag 7426
Query: 167 acacaggagacttctctcaagaagtttgttaggccagcatggatctttctactaatgggt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 acacaggagacttctctcaagaagtttgttaggccagcatggatctttctactaatgggt 7486
Query: 227 tctatcgtatatctttcttgtcattatgtatggtggaaattagattacgaggaaaaagaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 tctatcgtatatctttcttgtcattatgtatggtggaaattagattacgaggaaaaagaa 7546
Query: 287 ctcgaatatacgcataaagtgcaccagttggaaagcgaactagctgcattgaacgaagca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547 ctcgaatatacgcataaagtgcaccagttggaaagcgaactagctgcattgaacgaagca 7606
Query: 347 cacaattcttcggtatcttcagataaaaattctaaaaggtcaagcagggaagtggtataa 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7607 cacaattcttcggtatcttcagataaaaattctaaaaggtcaagca-ggaagtggtataa 7665
Query: 407 attttgggtaaatttgacgctagggaatgattcctctatttgaatcatctagaagattgg 466
||||| |||||| |||||||||||| |||| ||||||| ||||||||||||| ||||||
Sbjct: 7666 atttt-ggtaaa-ttgacgctaggg-atga-tcctcta-ttgaatcatctag-agattgt 7719
Query: 467 catttttt 474
||||||||
Sbjct: 7720 catttttt 7727
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,286
Number of Sequences: 1807
Number of extensions: 15286
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)