BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB11FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1207 0.0
>3x_Contig1442
Length = 8270
Score = 1207 bits (609), Expect = 0.0
Identities = 661/676 (97%), Gaps = 2/676 (0%)
Strand = Plus / Minus
Query: 90 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179
Query: 150 tcacataaaaaaaccgtgaaccttttcaggaactttcaaaagtgcgttcttagtgaaaag 209
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119
Query: 210 aaaaaaattccat-tgnttcttcactggctcctgaacaacaccttatatttcaaaacaat 268
||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059
Query: 269 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999
Query: 329 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939
Query: 389 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879
Query: 449 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819
Query: 509 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759
Query: 569 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 4699
Query: 629 gggtattctgatgttctggatccgtgtctgattcaaaagcgtctttggtaggcgtttgaa 688
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 4698 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 4639
Query: 689 ctcctgtactatttccagtggtgtttgttgattttgatttttgacaccagtccctatgaa 748
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 4638 ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 4579
Query: 749 attccccatgatttca 764
||| ||||||||||||
Sbjct: 4578 att-cccatgatttca 4564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7438
Number of Sequences: 1807
Number of extensions: 7438
Number of successful extensions: 117
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)