BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB11RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1281 0.0
>3x_Contig1361
Length = 8765
Score = 1281 bits (646), Expect = 0.0
Identities = 733/753 (97%), Gaps = 8/753 (1%)
Strand = Plus / Minus
Query: 49 cggaactttaccaatcgtttgattttagtttcaaaacttcaacaaacttggagtgttggt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 cggaactttaccaatcgtttgattttagtttcaaaacttcaacaaacttggagtgttggt 5401
Query: 109 ggtgaagtggaggcaagttgaacatcggtctaacacaaatagagactacgtcgtcaaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5400 ggtgaagtggaggcaagttgaacatcggtctaacacaaatagagactacgtcgtcaaata 5341
Query: 169 gttcatcaattagattttttagatcatcgcctgtttgtttgaagtctgggaatgcgttga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 gttcatcaattagattttttagatcatcgcctgtttgtttgaagtctgggaatgcgttga 5281
Query: 229 cttccaataatttgacttgataatcggaatcaacaaggaaatcgaagccaaacgtctcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 cttccaataatttgacttgataatcggaatcaacaaggaaatcgaagccaaacgtctcca 5221
Query: 289 aactattcttcagtgggcggaaatttaggcgatcaacattaactgcagctttgaacagtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 aactattcttcagtgggcggaaatttaggcgatcaacattaactgcagctttgaacagtt 5161
Query: 349 cagaaactgcttcgtgaatttgagtcctaatttcttcccttctatgcgaaggaatatcct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5160 cagaaactgcttcgtgaatttgagtcctaatttcttcccttctatgcgaaggaatatcct 5101
Query: 409 tcaaggcatcaaactcgatcacagaatttgatttaatatcatcatccgtttgcaagcaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5100 tcaaggcatcaaactcgatcacagaatttgatttaatatcatcatccgtttgcaagcaag 5041
Query: 469 tattagtcaaatgacaagctaattgctcaatatctaaaacgtcatattcttcggtaggtg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5040 tattagtcaaatgacaagctaattgctcaatatctaaaacgtcatattcttcggtaggtg 4981
Query: 529 gtacaaatttgttgggagcgaaaagtgctagcattctatcataaacaaacacctgtagat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4980 gtacaaatttgttgggagcgaaaagtgctagcattctatcataaacaaacacctgtagat 4921
Query: 589 cgccactgcaggtaacataacatctgatatgaaatttcctgccatgtgcttcactcaata 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4920 cgccactgcaggtaacataacatctgatatgaaatttcctgccatgtgcttcactcaata 4861
Query: 649 aaagaggattgtgttagtattcttggacgatgaaatgcggtaa-tgaaaagtggccactt 707
|||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 4860 aaagaggattgtgtaagtattcttggacgatgaaatggcgtaattgagaagtggccactt 4801
Query: 708 tatttatatttcgtctcagtggccctcattatcaggtttcatttttctttaaaacgagtt 767
|||| || ||||||||||| | |||||| |||| ||||||| || || ||||||||
Sbjct: 4800 tattagta-ttcgtctcagt-gtcctcatcatca-gtttcatctt--cttcaaacgagtc 4746
Query: 768 aaaaatagctttgtaattggttcaatagttttg 800
||||||||| |||||||| ||||||||||||||
Sbjct: 4745 aaaaatagc-ttgtaatt-gttcaatagttttg 4715
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7663
Number of Sequences: 1807
Number of extensions: 7663
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)