BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB12FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 811 0.0
>3x_Contig1774
Length = 27771
Score = 811 bits (409), Expect = 0.0
Identities = 455/468 (97%), Gaps = 2/468 (0%)
Strand = Plus / Minus
Query: 88 atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16951 atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 16892
Query: 148 gggactaaataagatcccagtaagacttaccgaaccaacatgtcctcacttgacatcaat 207
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16891 gggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatcaat 16832
Query: 208 gagcaacgtgttcttanatagtctgctcacagatacatctcagagaaactcgaggatcac 267
|||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16831 gagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggatcac 16772
Query: 268 ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16771 ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 16712
Query: 328 tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16711 tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 16652
Query: 388 ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16651 ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 16592
Query: 448 gcgcctgtcgtcttaatgaatggccgtttgcattcttatgaagggcatttcttagcagaa 507
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 16591 gcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagcagaa 16532
Query: 508 aca-tgcattctattcgggcattgcactttgtgggggtcaatcaatgt 554
||| ||||| |||| || ||||||||| |||| |||||||||||||||
Sbjct: 16531 acagtgcatcctatccgtgcattgcac-ttgttggggtcaatcaatgt 16485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,716
Number of Sequences: 1807
Number of extensions: 12716
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)