BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZB12RM1.SCF screened BAC_end
(1068 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 787 0.0
>3x_Contig1659
Length = 17570
Score = 787 bits (397), Expect = 0.0
Identities = 457/469 (97%), Gaps = 6/469 (1%)
Strand = Plus / Plus
Query: 25 gcttgaaggcaactttttgataaagatatcacagcattggaaagcgcagtcttgaagaaa 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6488 gcttgaaggcaactttttgataaagatatcacagcattggaaagcgcagtcttgaagaaa 6547
Query: 85 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 6607
Query: 145 ggaaaatagctttagatcgccagttggaacagtttgtaaatatttattattcatatttat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 6608 ggaaaatagctttagatcgccagttggaacagtttgtaaatatttattattcaaattaat 6667
Query: 205 ggcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6668 ggcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 6727
Query: 265 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6728 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 6787
Query: 325 agctaagaacatgattttcgtggttgaaatagtttttgttgcgataacattcgaggaaag 384
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6788 agctaagaacatgattttcgtggttgaaatagttcttgttgcgataacattcgaggaaag 6847
Query: 385 gatatgttgaattggaagacttttgggcccttaacgttatatattagatgaaccacgacg 444
||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 6848 gatatgttgaatt-gaagacttttggg-ccttaacgttat-gattagatgaaccacgacg 6904
Query: 445 ttaaaatagatttcatttccaatgtggtttcccttattggtttgaaggg 493
|||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct: 6905 -taaaatagtattcatttccaatgtggttt-ccttatt-gtttgaaggg 6950
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9865
Number of Sequences: 1807
Number of extensions: 9865
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 1068
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1052
effective length of database: 10,329,639
effective search space: 10866780228
effective search space used: 10866780228
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)