BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC01RM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1534 1070 0.0
3x_Contig1625 347 2e-95
>3x_Contig1534
Length = 9979
Score = 1070 bits (540), Expect = 0.0
Identities = 599/608 (98%), Gaps = 8/608 (1%)
Strand = Plus / Minus
Query: 204 gaatgcaagtatgcaacgttggtggattcgcaatatttggattttgaactctgaactctt 263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9976 gaatgcaagta-gcaacgttggtggattcgcaatatttggattttgaactctgaactctt 9918
Query: 264 cgggaactttacttcgggcttcgtcacccaagataacttcacgaggaatccatccatctt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9917 cgggaactttacttcgggcttcgtcacccaagataacttcacgaggaatccatccatctt 9858
Query: 324 tgtctatcaaattgaaccaactgtgtaaaacttcgaaaacgagatcagaatcgtaatcca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9857 tgtctatcaaattgaaccaactgtgtaaaacttcgaaaacgagatcagaatcgtaatcca 9798
Query: 384 ataattgtaataggtggaatccttcatcccagtagaatcctctagggaaaaatgcgcggc 443
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9797 atagttgtaataggtggaatccttcatcccagtagaatcctctagggaaaaatgcgcggc 9738
Query: 444 tgggtacc-atagagaagagctctaaagggccctcttcattcgaattcagcaattctatt 502
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9737 tgggtacccatagagaagagctctaaagggccctcttcattcgaattcagcaattctatt 9678
Query: 503 ctatcaaagttttcgttatcgaatgctgtttctctgtcaactagatgagtaccatggaaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9677 ctatcaaagttttcgttatcgaatgctgtttctctgtcaactagatgagtaccatggaaa 9618
Query: 563 tatgatagaccacctaatagatttgaaaaggtttcctgagcaaaatctctatataaggaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9617 tatgatagaccacctaatagatttgaaaaggtttcctgagcaaaatctctatataaggaa 9558
Query: 623 ttgtctgcaatgccaaatttcttgttgaacttctgttgcaccaaaccttccgccaataca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9557 ttgtctgcaatgccaaatttcttgttgaacttctgttgcaccaaaccttccgccaataca 9498
Query: 683 ataaggtgatcaactgagttttctgcaatttggtcttttgatccctttttgttgaaatat 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9497 ataaggtgatcaactgagttttctgcaatttggtcttttgatccctttttgttg-aatat 9439
Query: 743 aatattgaaacttg-agtgccctttcaaaggtttgtttgaatatactgcacattttcctg 801
||||||| |||||| ||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 9438 aatattg-aacttgaagtgccc-ttcaaaggtttg-ttgaatatactgcaca-tttcctg 9383
Query: 802 gaggaaaa 809
||||||||
Sbjct: 9382 gaggaaaa 9375
>3x_Contig1625
Length = 13618
Score = 347 bits (175), Expect = 2e-95
Identities = 194/199 (97%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 41 gctttggatatatttctttggcataggatattaaaagttctggattgttattcaatttgt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13421 gctttggatatatttctttggcataggatattaaaagttctggattgttattcaatttgt 13480
Query: 101 cgccttggaacgacgagtctagttcctcatattgataattttcctggagatgggattcta 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13481 cgccttggaacgacgagtctagttcctcatattgataattttcctggagatgggattcta 13540
Query: 161 acatttcctcttgtatggtctttgcgcggctcaaaatctcactgaatgcaagtatgcaac 220
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 13541 acatttcctcttgtatggtctttgcgcggctcaaaatctcactaaatgcaagt-cgcaac 13599
Query: 221 gttggtggattcgcaatat 239
|||||||| ||||| ||||
Sbjct: 13600 gttggtgggttcgccatat 13618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6909
Number of Sequences: 1807
Number of extensions: 6909
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)