BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC02FM1.SCF screened BAC_end
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1285 0.0
>3x_Contig1278
Length = 6932
Score = 1285 bits (648), Expect = 0.0
Identities = 708/720 (98%), Gaps = 6/720 (0%)
Strand = Plus / Plus
Query: 86 cgaagaaccaagattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 cgaagaaccaagattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatac 1710
Query: 146 gagcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 gagcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagata 1770
Query: 206 tcacacatgttttatttcgtcaccagactggaaaagtctgttgccggcactgcctgggaa 265
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 tcacacatgttctagttcgtcaccagactggaaaagtctgttgccggcactgcctgggaa 1830
Query: 266 cgggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 cgggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattc 1890
Query: 326 gcaagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggg-atag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1891 gcaagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggggatag 1950
Query: 385 tttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 tttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggac 2010
Query: 445 ctcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ctcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtga 2070
Query: 505 tttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 tttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgc 2130
Query: 565 atgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 atgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagac 2190
Query: 625 attcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 attcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactga 2250
Query: 685 caatctatatacaatggatccgtgttgtgcccctgccagactttactgttaagctta-gt 743
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct: 2251 caatctatatacaatggatccgtgttgtg-ccctgccagactttactgtt-agcttaggt 2308
Query: 744 gctttattcctcatagtggcctttaaaggtaatggttctttcgcctttgttgttcaacgg 803
||||||||| ||||||||||| ||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 2309 gctttattcgtcatagtggcc-ttagaggtaatgtttc-ttcgtctttgttgttcaacgg 2366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,113
Number of Sequences: 1807
Number of extensions: 13113
Number of successful extensions: 320
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)