BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC03FM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 682 0.0
>3x_Contig1611
Length = 15286
Score = 682 bits (344), Expect = 0.0
Identities = 379/388 (97%), Gaps = 2/388 (0%)
Strand = Plus / Plus
Query: 84 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 6173
Query: 144 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 6233
Query: 204 tccagcgctgctcttttttgtttccagttaacacgctcgtcagtctactttccactatgc 263
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tccagcgctgc-cggaagtgtttccagttaacacgctcgtcagtctactttccactatgc 6292
Query: 264 gacgaatatcaataaatgttgtctactccgcataatatacggagtgacttgtcttattat 323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6293 gacgaatatcaaaaaatgttgtctactccgcataatatacggagtgacttgtcttattat 6352
Query: 324 agccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6353 agccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaag 6412
Query: 384 cagctcaggaaccaaaaaaaaatatttgacagtgggacccatgggcaaattatgtactat 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6413 cagctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactat 6472
Query: 444 tagttaatcatttcttggaagactctgg 471
|||||||||||||| |||||||||||||
Sbjct: 6473 tagttaatcatttc-tggaagactctgg 6499
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,511
Number of Sequences: 1807
Number of extensions: 43511
Number of successful extensions: 5747
Number of sequences better than 1.0e-20: 1
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)