BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC03RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1037 0.0
>3x_Contig1801
Length = 57606
Score = 1037 bits (523), Expect = 0.0
Identities = 577/587 (98%), Gaps = 6/587 (1%)
Strand = Plus / Minus
Query: 43 cttgaagatcggaagaataatcatacttcccattttctaaacttgtttcgtgcggttgct 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11404 cttgaagatcggaagaataatcagacttcccattttctaaacttgtttcgtgcggttgct 11345
Query: 103 gcgctgtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaactta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11344 gcgctgtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaactta 11285
Query: 163 atgactatatatctcttaacgaaaggaatattaaacccatgtacataaatatcatatata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11284 atgactatatatctcttaacgaaaggaatattaaacccatgtacataaatatcatatata 11225
Query: 223 tttctgaaaatatcacatttaatattgagagatggactgaactgcggtgtgaatggaatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11224 tttctgaaaatatcacatttaatattgagagatggactgaactgcggtgtgaatggaatt 11165
Query: 283 aagaacctattttattcggttaattagatcggtattatacaaaatatcaagtcaaaatgc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11164 aagaacctattttattcggttaattagatcggtattatacaaaatatcaagtcaaaatgc 11105
Query: 343 tacatatgtgtttgcttacattagtcgccaagttgtaacttgtccaacgctacagagtcg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11104 tacatatgtgtttgcttacattagtcgccaagttgtaacttgtccaacgctacagagtcg 11045
Query: 403 aattgtaatgaaggattacgagctgtttgtgatttctttggaatggtacccggtgggtac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11044 aattgtaatgaaggattacgagctgtttgtgatttctttggaatggtacccggtgggtac 10985
Query: 463 cactcccctgtgaaaggttcttctgtgatgaagggatgcaaaatggcctgttgtggggtc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10984 cactcccctgtgaaaggttcttctgtgatgaagggatgcaaaatggcctgttgtggggtc 10925
Query: 523 caacgttcgagtgggatgagg-tcaacactcctctcaaaaaa-gt-acaagcagtccctg 579
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 10924 caacgttcgagtggattgaggttcaacactcctctcaaaaaatgtaacaagcagtccctg 10865
Query: 580 ttcttta-ttctctttcaacaag-gctggatt-ccagaaatcttttt 623
||||||| ||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 10864 ttctttatttctctttcaacaagtgctggattcccagaaatcctttt 10818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8505
Number of Sequences: 1807
Number of extensions: 8505
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)