BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC04FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 640 0.0
>3x_Contig1529
Length = 11812
Score = 640 bits (323), Expect = 0.0
Identities = 367/377 (97%), Gaps = 5/377 (1%)
Strand = Plus / Minus
Query: 87 tgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattagca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 tgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattagca 1947
Query: 147 tccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaactca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 tccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaactca 1887
Query: 207 tcctctgatttattcactaaattaccgtaggtgaaccatgttagctcttttccgtttcga 266
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1886 tcctctgatttattcactaaattaccgtag-tgaaccatgttagctcttttccgtttcga 1828
Query: 267 atattcatgggaagttaatagttcatatctttcaggtgtcatacacagggctcaacgtat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 atattcatgggaagttaatagttcatatctttcaggtgtcatacacagggctcaacgtat 1768
Query: 327 aacaagaagctctattgctcctgccacttctttgntgaagtgcatcttgaatggaagttt 386
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1767 aacaagaagctctattgctcctgccacttctttgttgaagtgcatcttgaatggaggttt 1708
Query: 387 gactattgaactatcttgtcttgcccaaaaaactggtaaattttgggggattttgcagaa 446
||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||
Sbjct: 1707 gactattgaactatcttgtcttggccaaaaaactgg-aaatttt-ggcgattttgcaga- 1651
Query: 447 cccttttttttgcaatt 463
|||||| |||||||||
Sbjct: 1650 -ccttttctttgcaatt 1635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,576
Number of Sequences: 1807
Number of extensions: 37576
Number of successful extensions: 873
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)