BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1088 0.0
>3x_Contig1779
Length = 24855
Score = 1088 bits (549), Expect = 0.0
Identities = 561/565 (99%)
Strand = Plus / Minus
Query: 51 attttactccggaaaagcttttccaaattgaaaatgactgttatcaaaacagtcttttct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18645 attttactccggaaaagcttttccaaattgaaaatgactgttatcaaaacagtcttttct 18586
Query: 111 actaccataaaatttctttagtatgtgagggccttctttcagttcaagctctcttactac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18585 actaccataaaatttctttagtatgtgagggccttctttcagttcaagctctcttactac 18526
Query: 171 tctactcgtatatcagatcctgcgtttcaacggaagctgcattgaacattttcgttgtag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18525 tctactcgtatatcagatcctgcgtttcaacggaagctgcattgaacattttcgttgtag 18466
Query: 231 ctgtgaaatttgcaagagatcttgaactttgctacttggataactttaatcacctgccaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18465 ctgtgaaatttgcaagagatcttgaactttgctacttggataactttaatcacctgccaa 18406
Query: 291 gagaagatttcttacaaataagatcgatatggctctattgttacttaaatgactcaaatc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18405 gagaagatttcttacaaataagatcgatatggctctattgttacttaaatgactcaaatc 18346
Query: 351 tatcgatgacattggggaaacctccaattattgatgaatctgatatgtcagtatcattcg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18345 tatcgatgacattggggaaacctccaattattgatgaatctgatatgtcagtatcattcg 18286
Query: 411 ggagaaactattttaaaactttgaaagcggaatgccctataagtcgctctcctgatgcca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18285 ggagaaactattttaaaactttgaaagcggaatgccctataagtcgctctcctgatgcca 18226
Query: 471 atgttgtggatgccatgaaagatgaatcgatggtagttggttgggtgaaaataaacccat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18225 atgttgtggatgccatgaaagatgaatcgatggtagttggttgggtgaaaataaacccat 18166
Query: 531 ggtattttcctgtcattttaaactactttagagcgggtttatggcaaaattcaaacaaga 590
||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 18165 ggtattttcctgtcattttaaactactttagagcgtgtttatgcaaaatttcaaacaaga 18106
Query: 591 tcactagatacctattttctgtgga 615
|||||||||||||||||||||||||
Sbjct: 18105 tcactagatacctattttctgtgga 18081
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8652
Number of Sequences: 1807
Number of extensions: 8652
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)