BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC05FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 944 0.0
>3x_Contig1640
Length = 15521
Score = 944 bits (476), Expect = 0.0
Identities = 557/579 (96%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 74 taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 1960
Query: 134 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 1900
Query: 194 cataagtttctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 253
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 cataagtgtctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 1840
Query: 254 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 1780
Query: 314 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 1720
Query: 374 tatatgaggatttattgaagttccacagcaacaggaccggttaggtctcggatattctat 433
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tatatgagga-ttattgaagttccacagcaacaggaccggttaggtctcggatattctat 1661
Query: 434 attntcttattttagtatgcaagcggaaagataattgcgctttcacattttttttgaagt 493
||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1660 attgtctgaatttagtatgcaagcggaaagataattgcgctttcaca-tttttttgaagt 1602
Query: 494 tgataaaatttcagaccttaacattatggactgttatcgaacaggagtctgaaagtaata 553
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1601 tgataaaatttcagaccttaacatgatggactgttatcgaacaggagtctgaaggtaata 1542
Query: 554 tttgaaagtgagcaccgactattttattttgagcttgcaatttataaacaaattcgacta 613
||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 1541 attgaaggtgagcaccgactattttcatttgagcttgcaatatataaacaaatcgaacta 1482
Query: 614 ccatgaaattcaccacccttctgttgagtatttaccata 652
| ||| |||||| || || ||||| ||||||||||||||
Sbjct: 1481 caatg-aattcaaca-ccatctgtagagtatttaccata 1445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7451
Number of Sequences: 1807
Number of extensions: 7451
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)