BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC05RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1398 0.0
>3x_Contig1785
Length = 37935
Score = 1398 bits (705), Expect = 0.0
Identities = 724/729 (99%), Gaps = 1/729 (0%)
Strand = Plus / Plus
Query: 53 gttgaataacttggaaacatttattaaaccatatgaaatttctgtgaagaaggagcaaaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33351 gttgaataacttggaaacatttattaaaccatatgaaatttctgtgaagaaggagcaaaa 33410
Query: 113 tgatgcgatcaagcaattaagttccgagtttgcatcaaaggcaaaagtaggctctaactc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33411 tgatgcgatcaagcaattaagttccgagtttgcatcaaaggcaaaagtaggctctaactc 33470
Query: 173 cgatgaccagccattacttttgacaaatggcgcgattggctcacaggcaactgggttttc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33471 cgatgaccagccattacttttgacaaatggcgcgattggctcacaggcaactgggttttc 33530
Query: 233 taactactgaacttgagggggtttagtaagttattttccatcgcactttcgatgctgtca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33531 taactactgaacttgagggggtttagtaagttattttccatcgcactttcgatgctgtca 33590
Query: 293 tgttaatttgatgaaccgtatgtataatatgtaataagaatgcaattacgttgagataaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33591 tgttaatttgatgaaccgtatgtataatatgtaataagaatgcaattacgttgagataaa 33650
Query: 353 taaaccaaccagaataaccaactatttcaataaaaaagattttaaagtgcctacattatg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33651 taaaccaaccagaataaccaactatttcaataaaaaagattttaaagtgcctacattatg 33710
Query: 413 tgcttataaaaatacaacccaaaataacgataaactatccagagacagaaaaatcttact 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33711 tgcttataaaaatacaacccaaaataacgataaactatccagagacagaaaaatcttact 33770
Query: 473 ctttgtaattgctattacgatctgccttagctgctttcttttctaagtcatcccagtcat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33771 ctttgtaattgctattacgatctgccttagctgctttcttttctaagtcatcccagtcat 33830
Query: 533 caccttcgtcatcttctgatccatcggcgaaatcatctgacccttcatcactgaattttt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33831 caccttcgtcatcttctgatccatcggcgaaatcatctgacccttcatcactgaattttt 33890
Query: 593 cgtcatccgaataatcctcttcttcttcagagtacacttcctcatcagatggatcctcat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33891 cgtcatccgaataatcctcttcttcttcagagtacacttcctcatcagatggatcctcat 33950
Query: 653 cagatgcctcgtattctgaaatttcttcctcgctctcatcagatctttcatcatcggatc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33951 cagatgcctcgtattctgaaatttcttcctcgctctcatcagatctttcatcatcggatc 34010
Query: 713 cagttgccaagaacgacccaccaccatccaaaaagaattgatgaggatcatttttgtaac 772
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |
Sbjct: 34011 cagttgccaagaacgaccacccaccatccaaaaagaattgatgaggatca-tcttgtagc 34069
Query: 773 gacttcatg 781
|||||||||
Sbjct: 34070 gacttcatg 34078
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7901
Number of Sequences: 1807
Number of extensions: 7901
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)