BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZC08FM1.SCF screened BAC_end (882 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig731 488 e-137 >3x_Contig731 Length = 3248 Score = 488 bits (246), Expect = e-137 Identities = 318/338 (94%), Gaps = 3/338 (0%) Strand = Plus / Plus Query: 202 tcggtgaaagaagatttgttgacactccaattaccgaaatgggtttcactggtttggctg 261 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tcggtgaaagaagagttgttgacactccaattaccgaaatgggtttcactggtttggctg 60 Query: 262 ttggtgccgctttgaagggtttaaagccaattgttgaattcatgtctttcaacttctcca 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttggtgccgctttgaagggtttaaagccaattgttgaattcatgtctttcaacttctcca 120 Query: 322 tgcaagctatggatcaag-tcatttacttcgctgctaagacttactatatgtccggtggt 380 |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 121 tgcaagctatggatcaagctcattaactccgctgctaagacttactatatgtccggtggt 180 Query: 381 actcagaaatgtcaaatcgttttcagaggtccaaacggttctgcttgtcggtgttgctgc 440 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 181 actcagaaatgtcaaatcgttttcagaggtccaaacggttctgc-tgtcggtgttgctgc 239 Query: 441 tcaacattcccaagattattttgtttggtaacgttcttttcccagtattaaaggttttgt 500 |||||||||||||||||||| || |||||| ||||| |||| ||| | ||||||||| Sbjct: 240 tcaacattcccaagattattctgcttggtacggttctgttccaggta-tgaaggttttgg 298 Query: 501 ttccctactttgctgaagattctaaagttttgttgaag 538 |||| |||| |||||||||| ||| || |||||||||| Sbjct: 299 ttccatactctgctgaagatgctagaggtttgttgaag 336 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,349 Number of Sequences: 1807 Number of extensions: 14349 Number of successful extensions: 180 Number of sequences better than 1.0e-20: 1 length of query: 882 length of database: 10,358,551 effective HSP length: 16 effective length of query: 866 effective length of database: 10,329,639 effective search space: 8945467374 effective search space used: 8945467374 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)