BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZC08FM1.SCF screened BAC_end
         (882 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig731                                                          488   e-137

>3x_Contig731 
          Length = 3248

 Score =  488 bits (246), Expect = e-137
 Identities = 318/338 (94%), Gaps = 3/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 202 tcggtgaaagaagatttgttgacactccaattaccgaaatgggtttcactggtttggctg 261
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcggtgaaagaagagttgttgacactccaattaccgaaatgggtttcactggtttggctg 60

                                                                       
Query: 262 ttggtgccgctttgaagggtttaaagccaattgttgaattcatgtctttcaacttctcca 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttggtgccgctttgaagggtttaaagccaattgttgaattcatgtctttcaacttctcca 120

                                                                       
Query: 322 tgcaagctatggatcaag-tcatttacttcgctgctaagacttactatatgtccggtggt 380
           |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 121 tgcaagctatggatcaagctcattaactccgctgctaagacttactatatgtccggtggt 180

                                                                       
Query: 381 actcagaaatgtcaaatcgttttcagaggtccaaacggttctgcttgtcggtgttgctgc 440
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 actcagaaatgtcaaatcgttttcagaggtccaaacggttctgc-tgtcggtgttgctgc 239

                                                                       
Query: 441 tcaacattcccaagattattttgtttggtaacgttcttttcccagtattaaaggttttgt 500
           |||||||||||||||||||| || ||||||  ||||| ||||  ||| | ||||||||| 
Sbjct: 240 tcaacattcccaagattattctgcttggtacggttctgttccaggta-tgaaggttttgg 298

                                                 
Query: 501 ttccctactttgctgaagattctaaagttttgttgaag 538
           |||| |||| |||||||||| ||| || ||||||||||
Sbjct: 299 ttccatactctgctgaagatgctagaggtttgttgaag 336


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,349
Number of Sequences: 1807
Number of extensions: 14349
Number of successful extensions: 180
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)