BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC08RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig731 577 e-164
>3x_Contig731
Length = 3248
Score = 577 bits (291), Expect = e-164
Identities = 351/367 (95%), Gaps = 3/367 (0%)
Strand = Plus / Minus
Query: 85 aatgtcttgggtggaacacaaaatgaccagaaacaagaacaccgaggtaagagccttcat 144
||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2501 aatgtattgggtggaaaaaaaaatgaccagaaacaagaacaccgaggtaagagctttcat 2442
Query: 145 gtcaacttttgagacatcttttggtaatatcttgtcttttgaaatgcaatatccaagcgt 204
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2441 gtcaacttttgagacatattttggtaatatcttgtcttttgaaatgcaatatccaagcgt 2382
Query: 205 caataacgttattcctgtaacgaattgaacgggaatgatccacgatctccgacgacctac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2381 caataacgttattcctgtaacgaattgaacgggaatgatccacgatctccgacgacctac 2322
Query: 265 cttctgggagtaccatgaatcaactatcggtgaccataggattttgaatgagtatggata 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2321 cttctgggagtaccatgaatcaactatcggtgaccataggattttgaatgagtatggata 2262
Query: 325 tgtagccattgaaaacaacccaatggttacgaagggagtttgtcttttgggaggatttca 384
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2261 tgtagccattgaaaacaacccaatggttacgaaggaggtttgtc-tttgggaggatttca 2203
Query: 385 atatgaatgggnatcgtttcaaaagttaaccccacaagttttgccttgcaaaggatttaa 444
||||||||||| |||||| |||| ||||||||||| || | ||||||||||| ||| |||
Sbjct: 2202 atatgaatggg-atcgttccaaaggttaaccccac-aggtatgccttgcaaaagatataa 2145
Query: 445 taccact 451
|||||||
Sbjct: 2144 taccact 2138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,326
Number of Sequences: 1807
Number of extensions: 19326
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)