BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZC09FM1.SCF screened BAC_end
         (1034 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1439                                                         674   0.0  

>3x_Contig1439 
          Length = 7662

 Score =  674 bits (340), Expect = 0.0
 Identities = 388/399 (97%), Gaps = 5/399 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   aaggactccaagagtggattaaaagttatgggtattgatttggggattgcaaattttgca 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 aaggactccaagagtggattaaaagttatgggtattgatttggggattgcaaattttgca 2764

                                                                        
Query: 146  ttcactacctttcattgggataaaggaatggaaagaccgatgttgaaagagatgtacaag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 ttcactacctttcattgggataaaggaatggaaagaccgatgttgaaagagatgtacaag 2704

                                                                        
Query: 206  gtccaattggcttttgttttcgtgaatttgaacgaaggtgagatcacaccaccattacgt 265
            |||||||||||   || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 gtccaattggcaggtgatttcgtgaatttgaacgaaggtgagatcacaccaccattacgt 2644

                                                                        
Query: 266  ccggaggtaatggcaacattgggtctaaatttagctaattggcttacgcggtttagctgt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 ccggaggtaatggcaacattgggtctaaatttagctaattggcttacgcggtttagctgt 2584

                                                                        
Query: 326  aatgcctatttcatcgaaaggcagagatcaagaagtgcatcttcttctacaatcttagag 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 aatgcctatttcatcgaaaggcagagatcaagaagtgcatcttcttctacaatcttagag 2524

                                                                        
Query: 386  aatattctcaaagtaatgatattggagtacgtgctttattcttacttacaaaatatgaat 445
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 2523 aatattctcaaagtaatgatattggagtacgtgctttattctaacttacaaaata-gaat 2465

                                                   
Query: 446  tgttagttgaaatcgttaccttatccattctttttccat 484
            |||||||   |||||||||| |||||| |||||||||||
Sbjct: 2464 tgttagt--gaatcgttacc-tatcca-tctttttccat 2430


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,056
Number of Sequences: 1807
Number of extensions: 17056
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 1034
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1018
effective length of database: 10,329,639
effective search space: 10515572502
effective search space used: 10515572502
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)