BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZC09FM1.SCF screened BAC_end (1034 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1439 674 0.0 >3x_Contig1439 Length = 7662 Score = 674 bits (340), Expect = 0.0 Identities = 388/399 (97%), Gaps = 5/399 (1%) Strand = Plus / Minus Query: 86 aaggactccaagagtggattaaaagttatgggtattgatttggggattgcaaattttgca 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2823 aaggactccaagagtggattaaaagttatgggtattgatttggggattgcaaattttgca 2764 Query: 146 ttcactacctttcattgggataaaggaatggaaagaccgatgttgaaagagatgtacaag 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2763 ttcactacctttcattgggataaaggaatggaaagaccgatgttgaaagagatgtacaag 2704 Query: 206 gtccaattggcttttgttttcgtgaatttgaacgaaggtgagatcacaccaccattacgt 265 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2703 gtccaattggcaggtgatttcgtgaatttgaacgaaggtgagatcacaccaccattacgt 2644 Query: 266 ccggaggtaatggcaacattgggtctaaatttagctaattggcttacgcggtttagctgt 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2643 ccggaggtaatggcaacattgggtctaaatttagctaattggcttacgcggtttagctgt 2584 Query: 326 aatgcctatttcatcgaaaggcagagatcaagaagtgcatcttcttctacaatcttagag 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2583 aatgcctatttcatcgaaaggcagagatcaagaagtgcatcttcttctacaatcttagag 2524 Query: 386 aatattctcaaagtaatgatattggagtacgtgctttattcttacttacaaaatatgaat 445 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 2523 aatattctcaaagtaatgatattggagtacgtgctttattctaacttacaaaata-gaat 2465 Query: 446 tgttagttgaaatcgttaccttatccattctttttccat 484 ||||||| |||||||||| |||||| ||||||||||| Sbjct: 2464 tgttagt--gaatcgttacc-tatcca-tctttttccat 2430 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,056 Number of Sequences: 1807 Number of extensions: 17056 Number of successful extensions: 121 Number of sequences better than 1.0e-20: 1 length of query: 1034 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1018 effective length of database: 10,329,639 effective search space: 10515572502 effective search space used: 10515572502 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)