BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZC09RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig715                                                         1251   0.0  

>3x_Contig715 
          Length = 2727

 Score = 1251 bits (631), Expect = 0.0
 Identities = 689/703 (98%), Gaps = 4/703 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   cttcttatctgaagctacgggctttgtcgtgaaaatgtcgcaaccacctgtgatactgca 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cttcttatctgaagctacgggctttgtcgtgaaaatgtcgcaaccacctgtgatactgca 1088

                                                                        
Query: 106  gtccgaggtctcgaaattaagagcctggttaacaacctctaaatcaaattcatcgataaa 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 gtccgaggtctcgaaattaagagcctggttaacaacctctaaatcaaattcatcgataaa 1148

                                                                        
Query: 166  ctttaaaagatgttaagtaacacatgatgcaaaaaatatacatacatgccgttaatataa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 ctttaaaagatgttaagtaacacatgatgcaaaaaatatacatacatgccgttaatataa 1208

                                                                        
Query: 226  ggttagtattccgtttgttcattatgaatatgtcagaactatattaaaacacgattattc 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 ggttagtattccgtttgttcattatgaatatgtcagaactatattaaaacacgattattc 1268

                                                                        
Query: 286  gcataccttcattattgcaggttaattggaagcggtgaaacgtttgaaaataaaacagta 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 gcataccttcattattgcaggttaattggaagcggtgaaacgtttgaaaataaaacagta 1328

                                                                        
Query: 346  ttcttgagagctcaaagacacactgtgctagattcaactaaattgacggcctcctatcaa 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 ttcttgagagctcaaagacacactgtgctagattcaactaaattgacggcctcctatcaa 1388

                                                                        
Query: 406  gcttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtga 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 gcttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtga 1448

                                                                        
Query: 466  taatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggta 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 taatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggta 1508

                                                                        
Query: 526  accctcagttatgatgccacagctaagtgagttgaaagcagacagcaccattgaacagaa 585
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1509 accctcagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaa 1568

                                                                        
Query: 586  gctaccattttcaagctaacattgacattctatatttcaaaagaagttgctttatgtatg 645
            |||||||| | ||||||||||||||||||||||| |  ||||||||||||||||||||||
Sbjct: 1569 gctaccatctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatg 1628

                                                                        
Query: 646  ttcctgtatgtacaaatccgtggcaaccacaactttttatgcggttaagaatttaaggta 705
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 1629 ttcctgtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaa-ttaaagta 1687

                                                       
Query: 706  ttatgaaatttagaaaattaatgttactattgtgaaataaatg 748
            |||||| | |||| ||||||||||||||| |||||||||||||
Sbjct: 1688 ttatgata-ttag-aaattaatgttacta-tgtgaaataaatg 1727


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8836
Number of Sequences: 1807
Number of extensions: 8836
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)