BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC11FM1.SCF screened BAC_end
(861 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1170 0.0
>3x_Contig1536
Length = 11572
Score = 1170 bits (590), Expect = 0.0
Identities = 685/706 (97%), Gaps = 8/706 (1%)
Strand = Plus / Minus
Query: 87 ctggtgaagttgtacacgcagtttatgctaaggagtacggtgaagatgttttcgaaatcc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 ctggtgaagttgtacacgcagtttatgctaaggagtacggtgaagatgttttcgaaatcc 8772
Query: 147 aggctgattctatccctgaacattcaaacgtcgttattgtcgatgatatcattgccaccg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8771 aggctgattctatccctgaacattcaaacgtcgttattgtcgatgatatcattgccaccg 8712
Query: 207 gtggctcttttaaagcagccggtgacttggctttgcagttgaatgcaaacatcttggagt 266
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8711 gtggctccgcaaaagcagccggtgacttggctttgcagttgaatgcaaacatcttggagt 8652
Query: 267 tctgtttcgttatggagttggatttcttgaaaggtactcaaaaactacaggcaccatctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8651 tctgtttcgttatggagttggatttcttgaaaggtactcaaaaactacaggcaccatctt 8592
Query: 327 ttactttgttaagtggtcaggaagaggctttatcaaaatgaacccagctaaaccacgttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8591 ttactttgttaagtggtcaggaagaggctttatcaaaatgaacccagctaaaccacgttt 8532
Query: 387 taaaactctctatggagcttcttaattcgattactatactacagaacatagataaacagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8531 taaaactctctatggagcttcttaattcgattactatactacagaacatagataaacagt 8472
Query: 447 gcaatttagcataacttacatatcaagaagtaaaaaaactgtttgtatcattactggtga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8471 gcaatttagcataacttacatatcaagaagtaaaaaaactgtttgtatcattactggtga 8412
Query: 507 ttttatctttttatattcgattacttgcatt-tgtgtataaatagatcttattaaactat 565
||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 8411 ttttatctttttatattcgattacttgcattgtgt-tataaatagatcttataaaactat 8353
Query: 566 tttacaggttaagcaaataacgacatggtctaaagcattgactttactatctggtatact 625
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8352 ttcacaggtaaagcaaataacgacatggtctaaagcattgactttactatctggtatact 8293
Query: 626 tgattgattcttttttttttaatcctacctaaaatcggaggacag-aaatcgactcatca 684
|||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8292 tgattgattc-tttttttctaatcctacctaaaatcggaggacagaaaatcgactcatca 8234
Query: 685 attgcatccaatacagtactgatatattaattaccaacacttcttgtaggttcatgaaac 744
|||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||
Sbjct: 8233 attgcatccaatacagtactgatataataatcaccaacacttc-tgtaggtccatgaaac 8175
Query: 745 acttgttttcaagggagcttgaatgacttttccatgtaatcggttg 790
|| ||||||| |||||||||||||||| | | ||||||||||||||
Sbjct: 8174 ac-tgttttc-agggagcttgaatgac-tctacatgtaatcggttg 8132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7752
Number of Sequences: 1807
Number of extensions: 7752
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 861
length of database: 10,358,551
effective HSP length: 16
effective length of query: 845
effective length of database: 10,329,639
effective search space: 8728544955
effective search space used: 8728544955
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)