BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZC11RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 1179 0.0
>3x_Contig1209
Length = 5033
Score = 1179 bits (595), Expect = 0.0
Identities = 667/687 (97%), Gaps = 3/687 (0%)
Strand = Plus / Plus
Query: 53 cttaaatagtcaaaatatgacacacgaaattgacaccatattatctacattgaagcagga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 cttaaatagtcaaaatatgacacacgaaattgacaccatattatctacattgaagcagga 2633
Query: 113 agtcaatagtgaattggccccattattcgacgattttgaagacttgtatgagaggaagct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 agtcaatagtgaattggccccattattcgacgattttgaagacttgtatgagaggaagct 2693
Query: 173 atggcatcagttaactgagaagctagcgatttttttccatgatagcaaatcataatcgtt 232
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2694 atggcatcagttaactgagaagctagcgatttttttccatgatagcaaatcagaatcgtt 2753
Query: 233 cagacttcgcctttatacccaatttgtcagtaagttcattgacaagataaaccaattgaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 cagacttcgcctttatacccaatttgtcagtaagttcattgacaagataaaccaattgaa 2813
Query: 293 tgttgttgagtttttgttgcaagcattacaagaaaacgatgacacagaagaatcattaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 tgttgttgagtttttgttgcaagcattacaagaaaacgatgacacagaagaatcattaca 2873
Query: 353 atatctaaaggatcttcaaaaggaattcaaagaaattgatgaaaagaagcaaagaaacga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 atatctaaaggatcttcaaaaggaattcaaagaaattgatgaaaagaagcaaagaaacga 2933
Query: 413 tggtttaaaacctcatgtaaatgggaacttgttgttagatattgagattgctcgtgtgaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 tggtttaaaacctcatgtaaatgggaacttgttgttagatattgagattgctcgtgtgaa 2993
Query: 473 attggaaaagggggacctagttgaggtcagagacattctagacgctattgggaaaacact 532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2994 attggaaaagggggacctagttgaggtcagagacatcctagacgctattgggaaaacact 3053
Query: 533 tgatgttcaagattcggtacctctcagagttacccgtgcctactactcgtgtaacgcttt 592
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3054 tgatgttcaagattcggtacctctcagagttaccggtgcctactactcgtgtaacgcttc 3113
Query: 593 ctattaccaagt-aagaaagactttcacattttctattataccagtcttttatttttctc 651
|||||||||||| ||||||||||| ||| ||||||||||||||||||||||| | ||||
Sbjct: 3114 ctattaccaagtaaagaaagacttcaacaatttctattataccagtcttttatatctctc 3173
Query: 652 aacaatcactttgggagaacaacagccggcgattgaccccaccttgaacaacaacatttg 711
||||||||||| || |||||||||| | |||||||| | || || ||||||||||| |||
Sbjct: 3174 aacaatcacttcggaagaacaacag-cagcgattga-cacaactcgaacaacaacaattg 3231
Query: 712 gcttacaatttgtgcattgcagcattg 738
|| ||||||||||||||||||||||||
Sbjct: 3232 gcatacaatttgtgcattgcagcattg 3258
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7941
Number of Sequences: 1807
Number of extensions: 7941
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)