BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZD01FM1.SCF screened BAC_end (900 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1548 494 e-139 >3x_Contig1548 Length = 9830 Score = 494 bits (249), Expect = e-139 Identities = 325/345 (94%), Gaps = 4/345 (1%) Strand = Plus / Plus Query: 400 tcagtgcagtatggaataaagtctttgtagttggatacttcagagacaacttcataaacc 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 tcagtgcagtatggaataaagtctttgtagttggatacttcagagacaacttcataaacc 63 Query: 460 tcatttggagtgccgcgaatgttcctttttaacacatagtgttgttcatctttggacgat 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 tcatttggagtgccgcgaatgttcctttttaacacatagtgttgttcatctttggacgat 123 Query: 520 gcttcggttgtcaagtt-aaaaatgacctttttccgaaggcagaagcttgtgggcagggt 578 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 124 gcttcggttgtcaagttaaaaaatgacctttttccgagggcagaagcttgtgggcagggt 183 Query: 579 gtaagcttagaaaaagac-gaattatagcatttttgcc-gtacctattgtcaacatcttc 636 |||||||||||||||||| |||| |||||| ||||||| ||||||| ||||||||||||| Sbjct: 184 gtaagcttagaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttc 243 Query: 637 gaatgagggctctattaaaataattccctttgtttataaactcatttgtccaacttttgg 696 ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||| Sbjct: 244 gaatgagggctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttgg 303 Query: 697 atttattttggttatttaaaatgaaaactctttttaatattaaaa 741 ||||| ||||||| |||| || |||||||||| ||||| |||| Sbjct: 304 cattattctggttatgtaaactg-aaactcttttcaatatgaaaa 347 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7635 Number of Sequences: 1807 Number of extensions: 7635 Number of successful extensions: 60 Number of sequences better than 1.0e-20: 1 length of query: 900 length of database: 10,358,551 effective HSP length: 16 effective length of query: 884 effective length of database: 10,329,639 effective search space: 9131400876 effective search space used: 9131400876 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)