BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD02FM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 704 0.0
>3x_Contig1193
Length = 4968
Score = 704 bits (355), Expect = 0.0
Identities = 409/419 (97%), Gaps = 6/419 (1%)
Strand = Plus / Plus
Query: 89 agcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctgg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 agcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctgg 4517
Query: 149 cggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 cggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtgg 4577
Query: 209 tgctgttttttgttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgtc 268
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 tgctgtcgctggttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgtc 4637
Query: 269 ccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagtg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 ccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagtg 4697
Query: 329 ttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 ttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaag 4757
Query: 389 cgttttatgagcatatgttatataaattagtcctatataatgata-ctgattgctaaatt 447
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4758 cgttttatgagcatatgttatataaattagtcctatataatgatacctgattgctaaatt 4817
Query: 448 actaaaccagggtcattaaagttcgaatacccacatatctaaagacgtaccatcaaaaa 506
||||||||| ||||| ||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 4818 actaaacca-ggtca-taaagttcgaata-ccacatatct-aagacgta-catcaaaaa 4871
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7099
Number of Sequences: 1807
Number of extensions: 7099
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)