BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD02RM1.SCF screened BAC_end
(851 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1251 1477 0.0
>3x_Contig1251
Length = 6331
Score = 1477 bits (745), Expect = 0.0
Identities = 797/805 (99%), Gaps = 7/805 (0%)
Strand = Plus / Plus
Query: 47 ttgtttcc-tgcttctactttattttactagtgtaagcgatactggcaatgtctctcaat 105
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2257 ttgtttccatgcttctactttattttactagtgtaagcgatactggcaatgtctctcaat 2316
Query: 106 agaaaaatatcatcgatcgtattgaaaggaaaactacgaaagaaatcattaaaggagtag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2317 agaaaaatatcatcgatcgtattgaaaggaaaactacgaaagaaatcattaaaggagtag 2376
Query: 166 aaagggtaaatgtaaatacatcaagcaaactgaagaaaactcattgagcgtggtaactag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2377 aaagggtaaatgtaaatacatcaagcaaactgaagaaaactcattgagcgtggtaactag 2436
Query: 226 ttgtaaatatactgaagatacggaactagaatgtctgtggacgagaaatatgatgctgct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2437 ttgtaaatatactgaagatacggaactagaatgtctgtggacgagaaatatgatgctgct 2496
Query: 286 tgcgagcttttatacagattggatccaacaaaggtgaaaacccatttacagaaccttatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2497 tgcgagcttttatacagattggatccaacaaaggtgaaaacccatttacagaaccttatt 2556
Query: 346 gcgttggagcctgaaatcgcagaaggattactttcctcaattgatatcccattgaccatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 gcgttggagcctgaaatcgcagaaggattactttcctcaattgatatcccattgaccatt 2616
Query: 406 aagaaggataccgatgctaacaacaaagaattcttatgttgcgactacaaccgtgacatc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 aagaaggataccgatgctaacaacaaagaattcttatgttgcgactacaaccgtgacatc 2676
Query: 466 gattctcataggtcaccgtggtctaaccagtacttccctgaattgagtgccgaagatttg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 gattctcataggtcaccgtggtctaaccagtacttccctgaattgagtgccgaagatttg 2736
Query: 526 aaagaaagtccttttcccagtgagccattgagagaactagaagttgcatgcaacaattct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2737 aaagaaagtccttttcccagtgagccattgagagaactagaagttgcatgcaacaattct 2796
Query: 586 ttcgagttgtatagggacctatactacgagggtggttacacttcaacgtatctctgggac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 ttcgagttgtatagggacctatactacgagggtggttacacttcaacgtatctctgggac 2856
Query: 646 gttgatgaatcaactgatttcgcgggagtcattcttttcaagaaagctgaatcagatgat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 gttgatgaatcaactgatttcgcgggagtcattcttttcaagaaagctgaatcagatgat 2916
Query: 706 tctaaatgggacagtatccacgtcatatctgccacccacgatgaagagggtatggaagtc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 tctaaatgggacagtatccacgtcatatctgccacccacgatgaagagggtatggaagtc 2976
Query: 766 acatataatgtcactacaacggttgatctttgcacttgggaaaacctatcaaaagtacca 825
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||
Sbjct: 2977 acatataatgtcactacaacgg-tgatc-ttgcactt-ggaaaacctatcaaaag-aaca 3032
Query: 826 acaacttatcatttgtccggtaatc 850
||||| ||||| |||||||||||||
Sbjct: 3033 acaac-tatca-ttgtccggtaatc 3055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6245
Number of Sequences: 1807
Number of extensions: 6245
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 851
length of database: 10,358,551
effective HSP length: 16
effective length of query: 835
effective length of database: 10,329,639
effective search space: 8625248565
effective search space used: 8625248565
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)