BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD03RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig380 914 0.0
>3x_Contig380
Length = 1539
Score = 914 bits (461), Expect = 0.0
Identities = 509/521 (97%), Gaps = 3/521 (0%)
Strand = Plus / Minus
Query: 44 gctttagagacgaacatcttcagaccttgtattttagtatagttttatatctaccttttt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gctttagagacgaacatcttcagaccttgtattttagtatagttttatatctaccttttt 944
Query: 104 taaggttcgtaatttaatgcacaatccacattatattgactgtaactgtagggtactata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 taaggttcgtaatttaatgcacaatccacattatattgactgtaactgtagggtactata 884
Query: 164 aggctaaataagtaatatatatggctttcaggcttttttagatatcaagcctttgaaaat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 aggctaaataagtaatatatatggctttcaggcttttttagatatcaagcctttgaaaat 824
Query: 224 gtcaaacgtattgccatctggttgcagatgataaacatttccggtgaaatgagtattact 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtcaaacgtattgccatctggttgcagatgataaacatttccggtgaaatgagtattact 764
Query: 284 tccagcaatcaactccttggcaatcaataagccgtaatcttcggtgattccaacaagttt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tccagcaatcaactccttggcaatcaataagccgtaatcttcggtgattccaacaagttt 704
Query: 344 tgctctgacagagttatggtccaatagttgtacaatttggtcggaatgcatccagtattt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgctctgacagagttatggtccaatagttgtacaatttggtcggaatgcatccagtattt 644
Query: 404 atagtactcgggcaagattggagatggtccgtacatcaagaattttttcaacaaagtatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atagtactcgggcaagattggagatggtccgtacatcaagaattttttcaacaaagtatc 584
Query: 464 aagttcgttgagatactttgctagaagtatttcatgatccaatggccggtaattgcggga 523
|||||||||||||||||| ||||||||||||||||||| |||| | |||||| ||||| |
Sbjct: 583 aagttcgttgagatacttcgctagaagtatttcatgat-caattggcggtaagtgcggca 525
Query: 524 ttccctaaagcatcttttttcaatattcaaaaatttgaccc 564
|| ||||||||||| | ||||| ||||||| | ||||||||
Sbjct: 524 tt-cctaaagcatc-tctttcattattcaagattttgaccc 486
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9423
Number of Sequences: 1807
Number of extensions: 9423
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)