BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD04FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1736 1110 0.0
>3x_Contig1736
Length = 21222
Score = 1110 bits (560), Expect = 0.0
Identities = 580/584 (99%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 86 catggcgaattactagtttcggaacacaagacaatttactccaaaaagataatttctctc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15116 catggcgaattactagtttcggaacacaagacaatttactccaaaaagataatttctctc 15057
Query: 146 cgttatatttcactttctcaacctttggattagtagctcatcgccaaattcactttcgct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15056 cgttatatttcactttctcaacctttggattagtagctcatcgccaaattcactttcgct 14997
Query: 206 tatcataccttatatatatatatatatatatggatgttttccataatttttgtcgtttat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14996 tatcataccttatatatatatatatatatatggatgttttccataatttttgtcgtttat 14937
Query: 266 gctcatcggaaatccattcgagactgaatttttcacacagtactcgtttatattgaaaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14936 gctcatcggaaatccattcgagactgaatttttcacacagtactcgtttatattgaaaac 14877
Query: 326 tcagaagaagctgaagaaaggtacgaaattcaagaaacttaccgaaagcttagtcttgga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14876 tcagaagaagctgaagaaaggtacgaaattcaagaaacttaccgaaagcttagtcttgga 14817
Query: 386 gtaacaagctatatgatttacattattaaagcttgttttactaatacatatgaccattat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14816 gtaacaagctatatgatttacattattaaagcttgttttactaatacatatgaccattat 14757
Query: 446 taatgtgactatatatatgtgtatctatatagcctgtatttacgagatggggacagagag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14756 taatgtgactatatatatgtgtatctatatagcctgtatttacgagatggggacagagag 14697
Query: 506 atgtagaaaagagtgaattgtgagtattatatgatacaggtggatctcattgctgg-tca 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 14696 atgtagaaaagagtgaattgtgagtattatatgatacaggtggatctcattgctggttca 14637
Query: 565 agcacctgtgctgaacatttgtagtagtgacttagctgctttcactgataccggtgtgta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14636 agcacctgtgctgaacatttgtagtagtgacttagctgctttcactgataccggtgtgta 14577
Query: 625 ttccggatgagatcgccgatgttgatgcgtattgttttgccggg 668
||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 14576 -tccggatgagatcgcggatgttgatgcgtatggttttgccggg 14534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,208
Number of Sequences: 1807
Number of extensions: 19208
Number of successful extensions: 2336
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)