BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1195 0.0
>3x_Contig1630
Length = 14771
Score = 1195 bits (603), Expect = 0.0
Identities = 688/707 (97%), Gaps = 7/707 (0%)
Strand = Plus / Plus
Query: 49 ttgagtgaatacgaacgtttacgtttgtacatatcctacctcaattatgacttaaatgaa 108
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7343 ttgagtgaatacgaacgtttacgttagtacatatcctacctcaattatgacttaaatgaa 7402
Query: 109 atatgtggattttcttcggatttagaaccagaagaagcaatgaaaatattcactggtggc 168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7403 atatgtggattttcttcggatttaaaaccagaagaagcaatgaaaatattcactggtggc 7462
Query: 169 tcgactgcttcaagcctttttttaacctcttataatgaagaagaatgttacgatgaatca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7463 tcgactgcttcaagcctttttttaacctcttataatgaagaagaatgttacgatgaatca 7522
Query: 229 tttttcattgcaccacagggcttactaaaactggctgtaactcaaatcggtgacactaaa 288
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7523 tttttcattgcaccacagggcttactaaaactggctgtaactcaaatcggggacactaaa 7582
Query: 289 attatactttgtgacaagaatggtattgctcattctttggctaaagttcatcatccttca 348
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 attatacttcgagacaagaatggtattgctcattctttggctaaagttcatcatccttca 7642
Query: 349 tcaagtagagagtccagaagacttggaggtcaattccaaactgactccttcggtgatact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 tcaagtagagagtccagaagacttggaggtcaattccaaactgactccttcggtgatact 7702
Query: 409 agatttttgaacaattttgcaaatacacgatcctttggcgatcggatcggaaaacgtgat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 agatttttgaacaattttgcaaatacacgatcctttggcgatcggatcggaaaacgtgat 7762
Query: 469 ggtctaacgtgcgagccggacatttattcgtacctcattgg-accaaccaaaatgttacc 527
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7763 ggtctaacgtgcgagccggacatttattcgtacctcattggtaccaaccaaaatgttacc 7822
Query: 528 acatgctgaaagatcaaaattgcagttcggtggtgatgaatgtttcttatgtttagtgac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7823 acatgctgaaagatcaaaattgcagttcggtggtgatgaatgtttcttatgtttagtgac 7882
Query: 588 agacggagtaactgaattgatgagcgatcaagaactctgtgatctcatcacctccacagt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7883 agacggagtaactgaattgatgagcgatcaagaactctgtgatctcatcacctccacagt 7942
Query: 648 gaacaatagagggttgaaaaactgcttcttcccaacttttgtgctcagggaggttttaca 707
|||||||||||| ||| ||||||||||| ||| |||| |||||||| ||| ||||||||
Sbjct: 7943 gaacaatagaggtttg-aaaactgcttc-tccacacttctgtgctca-ggaagttttaca 7999
Query: 708 atatgttaatggctattagcttttaaactttcttgataatgctactt 754
||||||| |||||||||||| | ||||| ||| ||||||||||||||
Sbjct: 8000 atatgtt-atggctattagc-tctaaacattc-tgataatgctactt 8043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6776
Number of Sequences: 1807
Number of extensions: 6776
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)