BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZD05FM1.SCF screened BAC_end
         (869 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1216                                                        1205   0.0  

>3x_Contig1216 
          Length = 5132

 Score = 1205 bits (608), Expect = 0.0
 Identities = 669/683 (97%), Gaps = 5/683 (0%)
 Strand = Plus / Minus

                                                                        
Query: 92   gtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgtagca 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 gtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgtagca 2062

                                                                        
Query: 152  tggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaattat 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 tggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaattat 2002

                                                                        
Query: 212  gaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacgaagat 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 gaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacgaagat 1942

                                                                        
Query: 272  aggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatccaca 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 aggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatccaca 1882

                                                                        
Query: 332  aaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggctgat 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 aaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggctgat 1822

                                                                        
Query: 392  actaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacatggat 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 actaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacatggat 1762

                                                                        
Query: 452  ggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttggaggca 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 ggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttggaggca 1702

                                                                        
Query: 512  catgacaaaggtactatgtcttgngatctgaagttgcagttgcaaggtttgcctggtcca 571
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1701 catgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctggtcca 1642

                                                                        
Query: 572  gaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaaattgat 631
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1641 gaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatttgat 1582

                                                                        
Query: 632  acgttgaataggaaacatcagggcattctgtggccaacgagcaaatttctccctggaaca 691
            ||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||
Sbjct: 1581 acgttgaataggaaacatcaggcaatcctgtggccaacgagcaaatttctccctggaaca 1522

                                                                        
Query: 692  ttagagctttattgcttaccttaagggaaggaacgtttccaattgcgctcttgcacctct 751
            ||||||| ||||||||||| | |||| |||||||| |||||||||||||| |||||||| 
Sbjct: 1521 ttagagc-ttattgcttacttaaaggaaaggaacg-ttccaattgcgctc-tgcacctc- 1466

                                   
Query: 752  ttccactggtaaaaaagttccat 774
            ||||||| ||| |||||||||||
Sbjct: 1465 ttccact-gtagaaaagttccat 1444


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5747
Number of Sequences: 1807
Number of extensions: 5747
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 869
length of database: 10,358,551
effective HSP length: 16
effective length of query: 853
effective length of database: 10,329,639
effective search space: 8811182067
effective search space used: 8811182067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)