BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD05RM1.SCF screened BAC_end
(854 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1411 0.0
>3x_Contig1696
Length = 16725
Score = 1411 bits (712), Expect = 0.0
Identities = 718/720 (99%)
Strand = Plus / Plus
Query: 47 ttgaacctttccttcttctccgtgtttgagagcggttttacacatgtgaactccacagta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7865 ttgaacctttccttcttctccgtgtttgagagcggttttacacatgtgaactccacagta 7924
Query: 107 tgagggatagggtgtttttgtatgtgttctgaaactgttcttttgtgctccttctcagtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7925 tgagggatagggtgtttttgtatgtgttctgaaactgttcttttgtgctccttctcagtt 7984
Query: 167 cctgtggggacctcctcgtgagtcaggcaagaggctacgacgctttgtacgtcgaatact 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7985 cctgtggggacctcctcgtgagtcaggcaagaggctacgacgctttgtacgtcgaatact 8044
Query: 227 tgatcggtgtttaacgagagagttacattgtatgtcacagcggtcgaacaattggatagg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8045 tgatcggtgtttaacgagagagttacattgtatgtcacagcggtcgaacaattggatagg 8104
Query: 287 ctcgaagattgcaatttagaatccacatcagcaaagatagttttgaaaactctttcgtct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8105 ctcgaagattgcaatttagaatccacatcagcaaagatagttttgaaaactctttcgtct 8164
Query: 347 tctgttagatcaattttcaaaacagtatcctttaattccatacctggcaattgtaaattg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8165 tctgttagatcaattttcaaaacagtatcctttaattccatacctggcaattgtaaattg 8224
Query: 407 atctctttcggatattcggagcctgcatcaaaaacaagctttgatatattagtgttttga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8225 atctctttcggatattcggagcctgcatcaaaaacaagctttgatatattagtgttttga 8284
Query: 467 atagaaaatccaaaagaatgagtagttctatctatgactttcattggtcgcgtcttgaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8285 atagaaaatccaaaagaatgagtagttctatctatgactttcattggtcgcgtcttgaat 8344
Query: 527 tccttggataattggacgccacgaatggctgctccattgacggcagattcatcagagttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8345 tccttggataattggacgccacgaatggctgctccattgacggcagattcatcagagttg 8404
Query: 587 acatttttagaaattaagctggctcctagatggttttccaattgctttttgacgaaaggc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8405 acatttttagaaattaagctggctcctagatggttttccaattgctttttgacgaaaggc 8464
Query: 647 accctagtagaaccaccagttaatatcacagaatccaaatctttaacattcagtgcttta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8465 accctagtagaaccaccagttaatatcacagaatccaaatctttaacattcagtgcttta 8524
Query: 707 ccgttcaagggagattctagcgtggacaaaattggttctataacaccggattgtaattct 766
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8525 ccgttcaatggagattctagcgtggacaaaattggttctataacaacggattgtaattct 8584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6488
Number of Sequences: 1807
Number of extensions: 6488
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 854
length of database: 10,358,551
effective HSP length: 16
effective length of query: 838
effective length of database: 10,329,639
effective search space: 8656237482
effective search space used: 8656237482
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)