BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD07FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig722 979 0.0
>3x_Contig722
Length = 2307
Score = 979 bits (494), Expect = 0.0
Identities = 542/554 (97%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 82 atcgaatgcctcttcttcagaattggctttagtagcaaacgcaataaacgtgctctttct 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 atcgaatgcctcttcttcagaattggctttagtagcaaacgcaataaacgtgctctttct 1479
Query: 142 gtcagtgatgggatcacttacgtaccatccttcgaagggatcaatctttaaattctcaaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 gtcagtgatgggatcacttacgtaccatccttcgaagggatcaatctttaaattctcaaa 1539
Query: 202 tttatcagatatatcaacctcatctgaaccagaagcctcttccccctcctcagtataaag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatcagatatatcaacctcatctgaaccagaagcctcttccccctcctcagtataaag 1599
Query: 262 cacaccatcgagctccgtcaagaaatcgaatatacaaacaagtccagggttaaatacaga 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 cacaccatcgagctccgtcaagaaatcgaatatacaaacaagtccagggttaaatacaga 1659
Query: 322 ttccaacacttcagtgaaaagatggtttaaatatttgacatcatatagtgctgatatttt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 ttccaacacttcagtgaaaagatggtttaaatatttgacatcatatagtgctgatatttt 1719
Query: 382 agcagataaactcacttctagtagatgtggcggttctgtttcagggtagtgctcgggaaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 agcagataaactcacttctagtagatgtggcggttctgtttcagggtagtgctcgggaaa 1779
Query: 442 cgatagatgtaatgtgaaatcctcgtgttgaggaactttaatttttattctgtcattata 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 cgatagatgtaatgtgaaatcctcgtgttgaggaactttaatttttattctgtcattatt 1839
Query: 502 aacc-ccgttagaagatctgggtagattagatttatcgcatcgatttcgtcatttacatc 560
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1840 aaccaccgttagaagatctgggtagatagcatttatcgcatcgatttcgtcatttacatc 1899
Query: 561 atcattgagtaccattatagattttttggaagttgttaatttgtattccaagccaatgtt 620
|||||||||||||||||||||| | ||||||| |||| | |||||||||||||||||||
Sbjct: 1900 atcattgagtaccattatagatatattggaag-tgttgaattgtattccaagccaatgtc 1958
Query: 621 aattcccaaacaaa 634
|| |||||||||||
Sbjct: 1959 aa-tcccaaacaaa 1971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8946
Number of Sequences: 1807
Number of extensions: 8946
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)