BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 989 0.0
>3x_Contig1155
Length = 6106
Score = 989 bits (499), Expect = 0.0
Identities = 528/537 (98%), Gaps = 1/537 (0%)
Strand = Plus / Plus
Query: 39 gcttccaaaggaaaaatgggctgtcgccacctccggtacttacgaaatggctcacaaatg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 gcttccaaaggaaaaatgggctgtcgccacctccggtacttacgaaatggctcacaaatg 5630
Query: 99 gtttgacatcttgggaatcaagagaccttctaactttatcaccgctaacgatgtcaagaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 gtttgacatcttgggaatcaagagaccttctaactttatcaccgctaacgatgtcaagaa 5690
Query: 159 cggtaagcctcatccagaaccttatttaaagggcagaaacggtttgtcttacccaatcaa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 cggtaagcctcatccagaaccttatttaaagggcagaaacggtttgtcttacccaatcaa 5750
Query: 219 caaagaaaacccagccgcttcaaaggttattgtctttgaagatgctccagcaggtatctt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751 caaagaaaacccagccgcttcaaaggttattgtctttgaagatgctccagcaggtatctt 5810
Query: 279 ggccggtaaagctgctggctgtaagatcgttggtattgccactactttcgacaaggaatt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 ggccggtaaagctgctggctgtaagatcgttggtattgccactactttcgacaaggaatt 5870
Query: 339 cttgatcgaaaagggttgcgatatcgtcatcaaggaccacaccaagttgagagttgctgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 cttgatcgaaaagggttgcgatatcgtcatcaaggaccacaccaagttgagagttgctgc 5930
Query: 399 ctaccaccctgaaaccgatgaagttgaattcatctttgacgaatacttatatgccaagga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 ctaccaccctgaaaccgatgaagttgaattcatctttgacgaatacttatatgccaagga 5990
Query: 459 tgatctacttgaatggtaattttcgtagaaccgcagttctcaatccattttgatttttan 518
||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 5991 tgatctacttgaatggtaattntcgtagaaccgcagttctcaatccattttgtatattag 6050
Query: 519 gagttgatgtgatgttggaataaagaaacaatgattgataatctcttcaggcaatga 575
|||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||
Sbjct: 6051 gagttgatgtgatgttggaataaa-agacagtgattgataatctctacaggcaatga 6106
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,830
Number of Sequences: 1807
Number of extensions: 18830
Number of successful extensions: 249
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)