BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD08RM1.SCF screened BAC_end
(866 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 965 0.0
3x_Contig1587 123 6e-28
>3x_Contig1751
Length = 24682
Score = 965 bits (487), Expect = 0.0
Identities = 509/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 47 gctttacaaacttctagatctgatttctacgggttgaacacttatgaatggtgttctggt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24168 gctttacaaacttctagatctgatttctacgggttgaacacttatgaatggtgttctggt 24227
Query: 107 atctctgactggacctcttctggttacgataaactagagtcttctttcaagaatggtagc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24228 atctctgactggacctcttctggttacgataaactagagtcttctttcaagaatggtagc 24287
Query: 167 attccagccattttctctgagtttggttgtatcactgctggcgaaagaagtttcgatgaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24288 attccagccattttctctgagtttggttgtatcactgctggcgaaagaagtttcgatgaa 24347
Query: 227 gtttctgaaggtctatacgatggtttgttggatacgttctctggtgggttagtctacgag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24348 gtttctgaaggtctatacgatggtttgttggatacgttctctggtgggttagtctacgag 24407
Query: 287 tactctgaagaagcaaacaactatggattggtcaagattgacgatgatggtaacattgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24408 tactctgaagaagcaaacaactatggattggtcaagattgacgatgatggtaacattgaa 24467
Query: 347 tttaaagatgattttgaaaacttaaagagccaatacgaaaaattggatctaccaacaatc 406
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24468 tttacagatgattttgaaaacttaaagagcctttacgaaaaattggatctaccaacaatc 24527
Query: 407 aaagaaagtgatgttgaggatgtagaagttttaacttgtgatgctagtaagatcaaagat 466
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24528 aaagaaagtgatgttgaggatgtagaagttttaacttgtgatgctagtaagaccaaagat 24587
Query: 467 gagaattccaagttt-ggaacaaatgacttcgaaattccagatcaaccatctgagatcac 525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24588 gagaattccaagtttgggaacaaatgacttcgaaattccagatcaaccatctgagatcac 24647
Query: 526 tgatttgattaaaaacggtgtcgaagttgaaaatg 560
||||||||||||| |||||||||||||||||||||
Sbjct: 24648 tgatttgattaaacacggtgtcgaagttgaaaatg 24682
>3x_Contig1587
Length = 10277
Score = 123 bits (62), Expect = 6e-28
Identities = 110/122 (90%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 683 agtgctactgctactttcttcttcttctcatcaagttcaagcaccagtgcattttccacc 742
|||||||||||||||| || || || |||||||||||||||||||||||||| |||||||
Sbjct: 1 agtgctactgctacttcctcctcctcctcatcaagttcaagcaccagtgcatcttccacc 60
Query: 743 accttcttctctttccaagagatcaggtgggtgcaataggtaccttcccaaatgaatact 802
|||| || ||| ||||||||| |||||| |||||||||||||| || |||||||||||||
Sbjct: 61 acctcctcctc-ttccaagagttcaggt-ggtgcaataggtacatt-ccaaatgaatact 117
Query: 803 gg 804
||
Sbjct: 118 gg 119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8552
Number of Sequences: 1807
Number of extensions: 8552
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)